1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcaagctagctgaagtccaggacagcaactagtttcagtaaaacgccaaaattaaggcgtggacgcttaattttccgttgcactttttcctggcatgcagGGAGATTATGAGCACGTACTGCCGAGAAGTCCGGCAACTGGGGCTCCGGCTTCTCGGCGCCATCTCTGTCAGCCTCGGCCTCGAGGAGGACTACATCGAG
species | Oryza sativa |
transcript | LOC_Os04g49194.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGCTGGAGGAATTCGTACCCGAGTGGCCCTCTAATCCGGCACAGTTCAA GGAGATTATGAGCACGTACTGCCGAGAAGTCCGGCAACTGGGGCTCCGGCTEST: gi|58612834|gb|CK040546.1|CK040546
genomic: CCGCTGGAGGAATTCGTACCCGAGTGGCCCTCTAATCCGGCACAGTTCAAgtaagcacac ... tggcatgcagGGAGATTATGAGCACGTACTGCCGAGAAGTCCGGCAACTGGGGCTCCGGCT
EST: CCGCTGGAGGAATTCGTACCCGAGTGGCCCTCTAATCCGGCACAGTTCAA GGAGATTATGAGCACGTACTGCCGAGAAGTCCGGCAACTGGGGCTCCGGCT
genomic: CCGCTGGAGGAATTCGTACCCGAGTGGCCCTCTAATCCGGCACAGTTCAAgtaagcacac ... tggcatgcagGGAGATTATGAGCACGTACTGCCGAGAAGTCCGGCAACTGGGGCTCCGGCT
ccaaaattaaggcgtggacgcttaattttccgttgcactttttcctggcatgcagGGAGATTATGAGCACGTACTGCCGAGAAGTCCGGCAACTGGGGCTCCGGCTTCTCGGCGCCATCTCTGTCAGCCTCGGCCTCGAGGAGGACTACATCGAG
gcttaat putative branch site (score: 8)
ttttccgttgcacttt CT-rich tract
ttaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaagctagctgaagtccaggacagcaactagtttcagtaaaacgccaaaattaaggcgtggacgcttaattttccgttgcactttttcctggcatgcagGGAGATTATGAGCACGTACTGCCGAGAAGTCCGGCAACTGGGGCTCCGGCTTCTCGGCGCCATCTCTGTCAGCCTCGGCCTCGAGGAGGACTACATCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - gctgaag
- - - - - - - - - - - cagcaac
- - - - - - - - - - - - - - - - - - agtaaaa
- - - - - - - - - - - - - - - - - - - - - - gccaaaa