1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCAACCACCACGACCACCATCCCCCGTGCGTGAGGGATCTGAAGAAGGCTCGTCTCCTCGGGCTTCATTATCAGAAGGGGGCAACTTGAATTATCAAGATgtgagatgtctgattatgcattgtttcatttccttgtttttctttaattcgtgtggatatgactgattgtttttag
species | Oryza sativa |
transcript | LOC_Os04g45190.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGTCTCCTCGGGCTTCATTATCAGAAGGGGGCAACTTGAATTATCAAGAT ACGCAGACAACTCGGGAATCTGATGAGCCACCATTGCTATCTEST: gi|27547307|gb|CA765509.2|CA765509
genomic: CGTCTCCTCGGGCTTCATTATCAGAAGGGGGCAACTTGAATTATCAAGATgtgagatgtc ... ttgtttttagACGCAGACAACTCGGGAATCTGATGAGCCACCATTGCTATCT
EST: CGTCTCCTCGGGCTTCATTATCAGAAGGGGGCAACTTGAATTATCAAGAT AC--A-AC---TCGGGAATCTGATGAGCCACCATTGCTATCTEST: gi|117238779|gb|CT842528.1|CT842528
genomic: CGTCTCCTCGGGCTTCATTATCAGAAGGGGGCAACTTGAATTATCAAGATgtgagatgtc ... ttgtttttagACGCAGACAACTCGGGAATCTGATGAGCCACCATTGCTATCT
EST: CGTCTCCTCGGGCTTCATTATCAGAAGGGGGCAACTTGAATTATCAAGAT ACGCAGACAACTCGGGAATCTGATGAGCCACCATTGCTATCT
genomic: CGTCTCCTCGGGCTTCATTATCAGAAGGGGGCAACTTGAATTATCAAGATgtgagatgtc ... ttgtttttagACGCAGACAACTCGGGAATCTGATGAGCCACCATTGCTATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAACCACCACGACCACCATCCCCCGTGCGTGAGGGATCTGAAGAAGGCTCGTCTCCTCGGGCTTCATTATCAGAAGGGGGCAACTTGAATTATCAAGATgtgagatgtctgattatgcattgtttcatttccttgtttttctttaattcgtgtggatatgactgattgtttttag
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