1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCGAGACGAAGAAGCAGATCTCATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGgtaactggaatctttttcccccacgaagaaattcagcaatttggtttcacggagcatagagcttgggaattctgcaaaaaaaaaaaaagaaaaaaagttaatgagatttgacgcgctaacgctaaatttggtgaaatgttgtgctccttag
species | Oryza sativa |
transcript | LOC_Os04g45190.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAG GTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGTCCGAACAGTGGCATTEST: gi|428790|gb|D24946.1|D24946
genomic: CATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGgtaactggaa ... tgctccttagGTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATT
EST: CATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAG GTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGNCGAACAGTGGCATTEST: gi|88851478|gb|CI670918.1|CI670918
genomic: CATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGgtaactggaa ... tgctccttagGTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATT
EST: CATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAG GTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATTEST: gi|88317555|gb|CI672132.1|CI672132
genomic: CATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGgtaactggaa ... tgctccttagGTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATT
EST: ATGCCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAG GTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATTEST: gi|88330878|gb|CI636890.1|CI636890
genomic: ATGC-TCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGgtaactggaa ... tgctccttagGTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATT
EST: CATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAG GTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATTEST: gi|117238779|gb|CT842528.1|CT842528
genomic: CATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGgtaactggaa ... tgctccttagGTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATT
EST: CATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAG GTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATTEST: gi|163929272|gb|EG712701.1|EG712701
genomic: CATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGgtaactggaa ... tgctccttagGTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATT
EST: CATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAG GTCAAGACAACTAGCCCAAAGAAGTACTGEST: gi|58606663|gb|CK034696.1|CK034696
genomic: CATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGgtaactggaa ... tgctccttagGTCAAGACAACTAGCCCAAAGAAGTACTG
EST: CATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAG GTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATTEST: gi|163929427|gb|EG713396.1|EG713396
genomic: CATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGgtaactggaa ... tgctccttagGTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATT
EST: CATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAG GTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATT
genomic: CATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGgtaactggaa ... tgctccttagGTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGAGACGAAGAAGCAGATCTCATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGgtaactggaatctttttcccccacgaagaaattcagcaatttggtttcacggagcatagagcttgggaattctgcaaaaaaaaaaaaagaaaaaaagttaatgagatttgacgcgctaacgctaaatttggtgaaatgttgtgctccttag
- - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - CAGATG