1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttgaagaaaaatatcaagatgtgggaagaatgcttgcctcatattgaatttgcttataatcgttccttgcattctactacaaaaatgtgcccttttcagATTGTGTATGGTTTGTTGCCTCGTGCTCCAATTGATTTGATGCCTTTACCATCTTCTGAAAAACTGAATTTTGATGCTAAGCAACGTGCTGAGTTGATGT
species | Oryza sativa |
transcript | LOC_Os04g39730.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
tgaatttgcttataatcgttccttgcattctactacaaaaatgtgcccttttcagATTGTGTATGGTTTGTTGCCTCGTGCTCCAATTGATTTGATGCCTTTACCATCTTCTGAAAAACTGAATTTTGATGCTAAGCAACGTGCTGAGTTGATGT
tgcccttttc CT-rich tract
tacaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgaagaaaaatatcaagatgtgggaagaatgcttgcctcatattgaatttgcttataatcgttccttgcattctactacaaaaatgtgcccttttcagATTGTGTATGGTTTGTTGCCTCGTGCTCCAATTGATTTGATGCCTTTACCATCTTCTGAAAAACTGAATTTTGATGCTAAGCAACGTGCTGAGTTGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- -gaagaaa
- - - - - - - - - - - - - - - -tgcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - -tgcttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacaaa