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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtacgcgagtctcttagtccatgtgcggttccggtaattttggtaccaaagaaagatggttcatggcgtatgtgtgttgattgtagAGCTATTAATAACATTACCATTCGATATCGTCATCCTATTCCTAGGTTAGATGATATGCTTGATGAATTGAGTGGCTCTATTGTGTTCTCCAAAGTTGAT

Basic information

species Oryza sativa
transcript LOC_Os04g39730.1
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggtaattttggtaccaaagaaagatggttcatggcgtatgtgtgttgattgtagAGCTATTAATAACATTACCATTCGATATCGTCATCCTATTCCTAGGTTAGATGATATGCTTGATGAATTGAGTGGCTCTATTGTGTTCTCCAAAGTTGAT
                                           tgttgat  putative branch site (score: 4)
                aaagaaa  TA-rich tract