1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaaggagcaaagctgattattggtggcgctacatctcttccaagttgcaattcaatgtggaaccctttgaactttatgttaatgtcatttacgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGACTTGAAACTGCACTGGCAGACTTGAAAGCAACTCTG
species | Oryza sativa |
transcript | LOC_Os02g57150.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAG GAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|88586988|gb|CI704711.1|CI704711
genomic: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAG GAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|38468410|gb|CF952541.1|CF952541
genomic: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAG GAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|88552750|gb|CI482788.1|CI482788
genomic: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: TACGATCTCAAGCAACAG GAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|88541694|gb|CI470980.1|CI470980
genomic: TACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAG GAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|88378742|gb|CI681558.1|CI681558
genomic: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAG GAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|88335167|gb|CI658174.1|CI658174
genomic: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAG GAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|88487783|gb|CI425054.1|CI425054
genomic: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAG GAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|88297278|gb|CI545368.1|CI545368
genomic: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: CTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAG GAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|88541160|gb|CI468412.1|CI468412
genomic: CTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: CGATCTCAAGCAACAG GAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|88578844|gb|CI687799.1|CI687799
genomic: CGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAG GAGAATGTNTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|88329844|gb|CI651516.1|CI651516
genomic: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAG GAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|88585329|gb|CI702953.1|CI702953
genomic: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAG GAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|117237837|gb|CT861936.1|CT861936
genomic: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAG GAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|88505968|gb|CI433474.1|CI433474
genomic: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAG GAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|88579760|gb|CI691745.1|CI691745
genomic: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAG GAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|95101340|gb|CI693086.1|CI693086
genomic: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAG GAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|38475684|gb|CF959817.1|CF959817
genomic: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: CTGCTGAGATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAG GAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|88544850|gb|CI472375.1|CI472375
genomic: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: GAAGGAGGAAGGCGCCGACCCCTACGATCTCAAGCAACAG GAGAATNTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|88585466|gb|CI703099.1|CI703099
genomic: GAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAG GAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|88531318|gb|CI459787.1|CI459787
genomic: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: GGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAG GAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|88266009|gb|CI376911.1|CI376911
genomic: GGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: AAGGCGCCGACCCCTACGATCTCAAGCAACAG GAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGAEST: gi|88587701|gb|CI704413.1|CI704413
genomic: AAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
EST: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAG GAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
genomic: CTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaaga ... acgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGA
tgcaattcaatgtggaaccctttgaactttatgttaatgtcatttacgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGACTTGAAACTGCACTGGCAGACTTGAAAGCAACTCTG
tgttaat putative branch site (score: 24)
aactttatgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaggagcaaagctgattattggtggcgctacatctcttccaagttgcaattcaatgtggaaccctttgaactttatgttaatgtcatttacgcctgcagGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGACTTGAAACTGCACTGGCAGACTTGAAAGCAACTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - gagcaaa
- - - - - -gctgatt
- - - - - - - - - - tggtggc
- - - - - - - - - - - - - - ctacatc
- - - - - - - - - - - - - - - - - - - - - agttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - caatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgtt