1 5' 3' | 2 5' 3' | 3 5' 3' |
gtattcctcctcgttcttctctggttggatcgatgcgcctgcgtggcgtagttgggggattcatccggactaactgatttctttcccctccaattggcgcatccagTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGACGTCGACCTGCAAGAGGATCGTCAAGGAGCTCCGCTCCTACGAGAAGGAG
species | Oryza sativa |
transcript | LOC_Os02g57150.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAG TTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGACEST: gi|88586988|gb|CI704711.1|CI704711
genomic: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAGgtattcctcc ... gcgcatccagTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGAC
EST: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAG TTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGACEST: gi|38468410|gb|CF952541.1|CF952541
genomic: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAGgtattcctcc ... gcgcatccagTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGAC
EST: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAG TTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGACEST: gi|88378742|gb|CI681558.1|CI681558
genomic: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAGgtattcctcc ... gcgcatccagTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGAC
EST: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAG TTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGACEST: gi|88335167|gb|CI658174.1|CI658174
genomic: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAGgtattcctcc ... gcgcatccagTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGAC
EST: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAG TTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGACEST: gi|88578844|gb|CI687799.1|CI687799
genomic: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAGgtattcctcc ... gcgcatccagTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGAC
EST: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAG TTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGACEST: gi|88329844|gb|CI651516.1|CI651516
genomic: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAGgtattcctcc ... gcgcatccagTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGAC
EST: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAG TTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGACEST: gi|88585329|gb|CI702953.1|CI702953
genomic: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAGgtattcctcc ... gcgcatccagTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGAC
EST: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAG TTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGACEST: gi|117237837|gb|CT861936.1|CT861936
genomic: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAGgtattcctcc ... gcgcatccagTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGAC
EST: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAG TTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGACEST: gi|88579760|gb|CI691745.1|CI691745
genomic: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAGgtattcctcc ... gcgcatccagTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGAC
EST: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAG TTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGACEST: gi|95101340|gb|CI693086.1|CI693086
genomic: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAGgtattcctcc ... gcgcatccagTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGAC
EST: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAG TTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGACEST: gi|38475684|gb|CF959817.1|CF959817
genomic: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAGgtattcctcc ... gcgcatccagTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGAC
EST: AGGGACGG-CTCCTCTCCTTCCCGGGCCCGCGCGAGCATCCAGTTTCGAG TTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGACEST: gi|88585466|gb|CI703099.1|CI703099
genomic: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAGgtattcctcc ... gcgcatccagTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGAC
EST: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAG TTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGACEST: gi|88587701|gb|CI704413.1|CI704413
genomic: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAGgtattcctcc ... gcgcatccagTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGAC
EST: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAG TTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGAC
genomic: AGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAGgtattcctcc ... gcgcatccagTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGAC
ttgggggattcatccggactaactgatttctttcccctccaattggcgcatccagTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGACGTCGACCTGCAAGAGGATCGTCAAGGAGCTCCGCTCCTACGAGAAGGAG
atttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcctcctcgttcttctctggttggatcgatgcgcctgcgtggcgtagttgggggattcatccggactaactgatttctttcccctccaattggcgcatccagTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGACGTCGACCTGCAAGAGGATCGTCAAGGAGCTCCGCTCCTACGAGAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG