1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgtattatttgtctttgggatattttattttcccttttgtagtagttggtatcttaagtgtttaatccaaataagcagGCAATTGCTTCTCAGTTGGCCAACCAGGATGAAAAAGTTCTTATTGTCAGCATCAACAGTTTGAGCAAG
species | Oryza sativa |
transcript | LOC_Os02g57120.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCTGTTTGACAACGGTGGTTACTCAATTTGATCCGCTGACATGCCTAAGA GCAATTGCTTCTCAGTTGGCCAACCAGGATGAAAAAGTTCTTATTGTCAGCEST: gi|29657281|gb|CB653556.1|CB653556
genomic: TCTGTTTGACAACGGTGGTTACTCAATTTGATCCGCTGACATGCCTAAGAgtatgtatta ... aaataagcagGCAATTGCTTCTCAGTTGGCCAACCAGGATGAAAAAGTTCTTATTGTCAGC
EST: TCTGTTTGACAACGGTGGTTACTCAATTTGATCCGCTGACATGCCTAAGA GCAATTGCTTCTCAGTTGGCCAACCAGGATGAAAAAGTTCTTATTGTCAGCEST: gi|87012655|gb|CI295099.1|CI295099
genomic: TCTGTTTGACAACGGTGGTTACTCAATTTGATCCGCTGACATGCCTAAGAgtatgtatta ... aaataagcagGCAATTGCTTCTCAGTTGGCCAACCAGGATGAAAAAGTTCTTATTGTCAGC
EST: TCTGTTTGACAACGGTGGTTACTCAATTTGATCCGCTGACATGCCTAAGA GCAATTGCTTCTCAGTTGGCCAACCAGGATGAAAAAGTTCTTATTGTCAGC
genomic: TCTGTTTGACAACGGTGGTTACTCAATTTGATCCGCTGACATGCCTAAGAgtatgtatta ... aaataagcagGCAATTGCTTCTCAGTTGGCCAACCAGGATGAAAAAGTTCTTATTGTCAGC
tttattttcccttttgtagtagttggtatcttaagtgtttaatccaaataagcagGCAATTGCTTCTCAGTTGGCCAACCAGGATGAAAAAGTTCTTATTGTCAGCATCAACAGTTTGAGCAAG
gtttaat putative branch site (score: 23)
tttaatccaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtattatttgtctttgggatattttattttcccttttgtagtagttggtatcttaagtgtttaatccaaataagcagGCAATTGCTTCTCAGTTGGCCAACCAGGATGAAAAAGTTCTTATTGTCAGCATCAACAGTTTGAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG