1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGAAAGGCAATGGAGAACTGTATCGATACTCTTATAGTTAAATTGCTGCATGCAACCAAAGATGCTGCCTTGAAGgtactgcactgacagtgttcttttcagcttgcagttcttgatgccataaagttattgccctctcaagccttttatgacattgtcattgcag
species | Oryza sativa |
transcript | LOC_Os02g57120.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATACTCTTATAGTTAAATTGCTGCATGCAACCAAAGATGCTGCCTTGAAG GTTGTAAATCAAGCCCATATCTGTTTGACAACGGTGGTTACTCAATTTGATEST: gi|87012655|gb|CI295099.1|CI295099
genomic: ATACTCTTATAGTTAAATTGCTGCATGCAACCAAAGATGCTGCCTTGAAGgtactgcact ... gtcattgcagGTTGTAAATCAAGCCCATATCTGTTTGACAACGGTGGTTACTCAATTTGAT
EST: TAAATTGCTGCATGCAACCAAAGATGCTGCCTTGAAG GTTGTAAATCAAGCCCATATCTGTTTGACAACGGTGGTTACTCAATTTGATEST: gi|86849663|gb|CI299796.1|CI299796
genomic: TAAATTGCTGCATGCAACCAAAGATGCTGCCTTGAAGgtactgcact ... gtcattgcagGTTGTAAATCAAGCCCATATCTGTTTGACAACGGTGGTTACTCAATTTGAT
EST: ATACTCTTATAGTTAAATTGCTGCATGCAACCAAAGATGCTGCCTTGAAG GTTGTAAATCAAGCCCATATCTGTTTGACAACGGTGGTTACTCA
genomic: ATACTCTTATAGTTAAATTGCTGCATGCAACCAAAGATGCTGCCTTGAAGgtactgcact ... gtcattgcagGTTGTAAATCAAGCCCATATCTGTTTGACAACGGTGGTTACTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAAAGGCAATGGAGAACTGTATCGATACTCTTATAGTTAAATTGCTGCATGCAACCAAAGATGCTGCCTTGAAGgtactgcactgacagtgttcttttcagcttgcagttcttgatgccataaagttattgccctctcaagccttttatgacattgtcattgcag
- - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG