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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTAAATCATCTTAAAGCTCTCTCTTGGTGATGCAAGGGCATATTACCTTTCCACTGCCCAGAATGAACTCGGAGTTGTTTCTGCACAAAGTATAACTGgtaggtgttttctaatattggagtgccaaattactcactattgatttttagctgaaggatacatcatgcaatgtgtgtgtgtgaaatagtttcaattgttcccagtagtgttctgtaatgtggctgctttgtgttgctccag

Basic information

species Oryza sativa
transcript LOC_Os02g57070.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g57070.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM5G841900_T03 (Zea mays), 5'ss of exon 5
CCTTAAATCATCTTAAAGCTCTCTCTTGGTGATGCAAGGGCATATTACCTTTCCACTGCCCAGAATGAACTCGGAGTTGTTTCTGCACAAAGTATAACTGgtaggtgttttctaatattggagtgccaaattactcactattgatttttagctgaaggatacatcatgcaatgtgtgtgtgtgaaatagtttcaattgttcccagtagtgttctgtaatgtggctgctt-tgtgttgctccag
                  || ||||||||||||||||||||||||||||||||||||||  | |||||||| ||||| ||||| |||||||| ||| |||||| |                                                ||||| | ||  ||||||| ||| |   || ||  | |    || |||    |  ||||    ||||| ||| |     |||| |  |||
------------------CTTTCTCTTGGTGATGCAAGGGCATATTACCTTTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTGgtatg------------------------------------------------gaagggtgcaaaatgcaatttgtttacatggaactgctatcgttattctagattttgtt----aatgttgcttcccacatgtttcctcag

upper sequence: LOC_Os02g57070.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM5G841900_T02 (Zea mays), 5'ss of exon 3
CCTTAAATCATCTTAAAGCTCTCTCTTGGTGATGCAAGGGCATATTACCTTTCCACTGCCCAGAATGAACTCGGAGTTGTTTCTGCACAAAGTATAACTGgtaggtgttttctaatattggagtgccaaattactcactattgatttttagctgaaggatacatcatgcaatgtgtgtgtgtgaaatagtttcaattgttcccagtagtgttctgtaatgtggctgctt-tgtgttgctccag
|||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||  | |||||||| ||||| ||||| |||||||| ||| |||||| |                                                ||||| | ||  ||||||| ||| |   || ||  | |    || |||    |  ||||    ||||| ||| |     |||| |  |||
CCTTAAATAATGTTAAAGCTTTCTCTTGGTGATGCAAGGGCATATTACCTTTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTGgtatg------------------------------------------------gaagggtgcaaaatgcaatttgtttacatggaactgctatcgttattctagattttgtt----aatgttgcttcccacatgtttcctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86434148|gb|CI094491.1|CI094491
EST:     TTCCACTGCCCAGAATGAACTCGGAGTTGTTTCTGCACAAAGTATAACTG                         GTGGTACACTAGTCCCGATCAGTTGGACCGAGATGCAATGCGAATTGACGG
genomic: TTCCACTGCCCAGAATGAACTCGGAGTTGTTTCTGCACAAAGTATAACTGgtaggtgttt ... gttgctccagGTGGTACACTAGTCCCGATCAGTTGGACTGAGATGCAATGCGAATTGACGG