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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgggttctgttttctttgctgatatgcttccatttaaacctttttcagggatctcttgtattgcttcgctttgagtcagttaccaaacacatttacaatccaatgctcctgcttgccatatgttccttttagactatcacaacaaagttcttcatggttcagctatgctcctctgtttgtagGCAGCAAGATGTTCGTGCAACTGAAATCGACAAGGTGGATATGTTTCAGTCATACCGACCTGGTGATATTGTCAGAGCCCTGGTTGTATCCTTAAGGGGA

Basic information

species Oryza sativa
transcript LOC_Os02g57070.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g57070.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM5G841900_T03 (Zea mays), 3'ss of exon 3
gtacgggttctgttttctttgctgatatgcttccatttaaacctttttcagggatctcttgtattgcttcgctttgagtcagttaccaaacacatttacaatccaatgctcctgcttgccatatgttccttttagac-tatcacaacaaagttcttcatggttcagctatgctcctctgtttgtagGCAGCAAGATGTTCGTGCAACTGAAATCGACAAGGTGGATATGTTTCAGTCATACCGACCTGGTGATATTGTCAGAGCCCTGGTTGTATCCTTAAGGGGA
                                                                                 | |         | ||  | ||  |||||| || |   | |  |  | |     || |||||    ||||||  ||||   |   || || |    |   || ||||||||||||||||||||||||||||| ||||||||||||||||  || ||||| || ||||| || ||||| | |||  |||||               
---------------------------------------------------------------------------------gctgaattctgtacttggattc--atgctcttgttcatcttggggacttagggaacctatcaggggaaagtttctcataaatttcctctgttt---tacctgcagGCAGCAAGATGTTCGTGCAACTGAAATTGACAAGGTGGATATGTACCAATCATATCGTCCTGGGGACATTGTTAAAGCTATGGTT---------------

upper sequence: LOC_Os02g57070.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM5G841900_T04 (Zea mays), 3'ss of exon 3
gtacgggttctgttttctttgctgatatgcttccatttaaacctttttcagggatctcttgtattgcttcgctttgagtcagttaccaaacacatttacaatccaatgctcctgcttgccatatgttccttttagac-tatcacaacaaagttcttcatggttcagctatgctcctctgtttgtagGCAGCAAGATGTTCGTGCAACTGAAATCGACAAGGTGGATATGTTTCAGTCATACCGACCTGGTGATATTGTCAGAGCCCTGGTTGTATCCTTAAGGGGA
                                                                                 | |         | ||  | ||  |||||| || |   | |  |  | |     || |||||    ||||||  ||||   |   || || |    |   || ||||||||||||||||||||||||||||| ||||||||||||||||  || ||||| || ||||| || ||||| | |||  |||||||||||||||  |  
---------------------------------------------------------------------------------gctgaattctgtacttggattc--atgctcttgttcatcttggggacttagggaacctatcaggggaaagtttctcataaatttcctctgttt---tacctgcagGCAGCAAGATGTTCGTGCAACTGAAATTGACAAGGTGGATATGTACCAATCATATCGTCCTGGGGACATTGTTAAAGCTATGGTTGTATCCTTAATTGAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88340166|gb|CI652515.1|CI652515
EST:     ATGTGTGTTGACTCAAAGGCTGTCAAGGAAAAGTTCACTGGCATGATAAG                         GCAGCAAGATGTTCGTGCAACTGAAATCGACAAGGTGGATATGTTTCAGTC
genomic: ATGTGTGTTGACTCAAAGGCTGTCAAGGAAAAGTTCACTGGCATGATAAGgtacgggttc ... ctgtttgtagGCAGCAAGATGTTCGTGCAACTGAAATCGACAAGGTGGATATGTTTCAGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagactatcacaacaaagttcttcatggttcagctatgctcctctgtttgtagGCAGCAAGATGTTCGTGCAACTGAAATCGACAAGGTGGATATGTTTCAGTCATACCGACCTGGTGATATTGTCAGAGCCCTGGTTGTATCCTTAAGGGGA
                                        ctcctctgttt  CT-rich tract