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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtggacacaacaataaaccagttgttaatatcatttggcactcgagtttctaatattatccattggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTGACCAGGCGCGTGAGCCCATCATCCAAGCCAAAGACAAACTTGTAGGCAA

Basic information

species Oryza sativa
transcript LOC_Os02g56850.4
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g56850.1 (Oryza sativa), 3'ss of exon 16
lower sequence: GRMZM5G806449_T03 (Zea mays), 3'ss of exon 16
--------gtacgtggacacaac----aataaaccagttgttaatatcatttggcactcgagtttctaatattatccattggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTGACCAGGCGCGTGAGCCCATCATCCAAGCCAAAGACAAACTTGTAGGCAA
        ||     || ||  |    | |||| ||| || | ||||| ||| ||      || | | ||  | ||  |||||||| ||||| || || ||||| || |||||||||||||| ||||| ||||| ||| |||| |||||| |||||||  |||||||||||||||| |||||||| ||||
gtatgttcgtctaaagagacctcttgaagtaaagcagctgctgatatcttttcgcctaatggtgtattatgct-tctgttggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGACGAGGCGCTTGAGCCCGACATCCAAGCCAAAGACGAACTTGTAAGCAA

upper sequence: LOC_Os02g56850.1 (Oryza sativa), 3'ss of exon 16
lower sequence: PP1S116_56V6.1 (Physcomitrella patens), 3'ss of exon 16
----------------gtacgtggacacaacaataaaccagttgttaatatca--tttggcactcgagtttctaat----attatccattggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTGACCAGGCGCGTGAGCCCATCATCCAAGCCAAAGACA--AACTTGTAGGCAA---
                  |  | |      | || |      | | ||| |||  ||  | | |  | | |  | |    ||| ||   |  |||| |||||||||||||| ||| | |||||||| ||||| ||||||||||| ||    || ||  | || | |||     | |||   |||     ||  |||||  |    
tcgataaatcctcaaatcattttgttttggccattacatgtgtttgaatgtcagattaaggagtataatattgatttcctattgtcgtgtaccttttcagGTTGGTATTCATCCGACAGCTGCTGAGGAGTTGGTGACAATGCGAACGGCCACAAGAAGAGTCACCCC-----CAAAGGGGAAGTTCTCAAGGTGTAGATATGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88291967|gb|CI532559.1|CI532559
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86251596|gb|CI016885.1|CI016885
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88848384|gb|CI086906.1|CI086906
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88254847|gb|CI351475.1|CI351475
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86431565|gb|CI085176.1|CI085176
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|9886227|gb|AU102120.1|AU102120
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88217368|gb|CI217217.1|CI217217
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88323267|gb|CI553512.1|CI553512
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88459892|gb|CI524351.1|CI524351
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86522150|gb|CI162356.1|CI162356
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|89184506|gb|CI047071.1|CI047071
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|29670416|gb|CB666691.1|CB666691
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88295376|gb|CI527739.1|CI527739
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|29675049|gb|CB671324.1|CB671324
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86434618|gb|CI105851.1|CI105851
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|18385573|gb|BM418772.1|BM418772
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACA-TGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|87015137|gb|CI273535.1|CI273535
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88455858|gb|CI526674.1|CI526674
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88460573|gb|CI532046.1|CI532046
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88320835|gb|CI527987.1|CI527987
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86594898|gb|CI258152.1|CI258152
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86489073|gb|CI131706.1|CI131706
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88319637|gb|CI520680.1|CI520680
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88256324|gb|CI358712.1|CI358712
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|33675534|gb|CF303773.1|CF303773
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88841227|gb|CI080681.1|CI080681
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|58686026|gb|CK074713.1|CK074713
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|89198081|gb|CI117559.1|CI117559
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|89185441|gb|CI051769.1|CI051769
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|33682254|gb|CF310493.1|CF310493
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|29625188|gb|CB630199.1|CB630199
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86603737|gb|CI112497.1|CI112497
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88274060|gb|CI394466.1|CI394466
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88964176|gb|CI045369.1|CI045369
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86603354|gb|CI112114.1|CI112114
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88957187|gb|CI095173.1|CI095173
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88833560|gb|CI077041.1|CI077041
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86426951|gb|CI072048.1|CI072048
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|89187152|gb|CI047219.1|CI047219
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88408891|gb|CI554213.1|CI554213
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88966781|gb|CI366004.1|CI366004
EST:     GGCTGTAGCCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: GGCTGTAG-CGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86594937|gb|CI258191.1|CI258191
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|87014199|gb|CI273389.1|CI273389
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGGCCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|396941644|gb|HO188301.1|HO188301
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88845181|gb|CI084106.1|CI084106
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|89190847|gb|CI392700.1|CI392700
EST:     TGGCTGTAGCGCTGAAGTGTTGAGCCACCAAGGCGACCTTTGACACCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|218481326|gb|FG969724.1|FG969724
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86430740|gb|CI083163.1|CI083163
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86599008|gb|CI355625.1|CI355625
EST:     TAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88257343|gb|CI359731.1|CI359731
EST:     TGGCTGTAGCGCTGAAGTGTGGGGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86872978|gb|CI326975.1|CI326975
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86426091|gb|CI071188.1|CI071188
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88955687|gb|CI091976.1|CI091976
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88849681|gb|CI089787.1|CI089787
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88275065|gb|CI395669.1|CI395669
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACACCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTT
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88838759|gb|CI376297.1|CI376297
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88848329|gb|CI086851.1|CI086851
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88460680|gb|CI534552.1|CI534552
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88906458|gb|CI375530.1|CI375530
EST:     TGGCTTTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86896270|gb|CI330158.1|CI330158
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88955638|gb|CI091927.1|CI091927
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86526760|gb|CI166966.1|CI166966
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCA-CCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88253128|gb|CI351754.1|CI351754
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAAATGCGGACACT
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAA-TGCGGAC-CT
EST: gi|86845452|gb|CI340491.1|CI340491
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88257486|gb|CI359874.1|CI359874
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|89188782|gb|CI048518.1|CI048518
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86602727|gb|CI357091.1|CI357091
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88248383|gb|CI248232.1|CI248232
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86429566|gb|CI076247.1|CI076247
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgttaatatcatttggcactcgagtttctaatattatccattggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTGACCAGGCGCGTGAGCCCATCATCCAAGCCAAAGACAAACTTGTAGGCAA
                            ttctaat  putative branch site (score: 2)
                         agtttctaatattat  TA-rich tract