1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTCgtaagccaataaaccttgattgttctctgttatctccagtttttgtttttaactgaaacaagtagcatctacaagatggccacatatatacttcacaact...
species | Oryza sativa |
transcript | LOC_Os02g56850.4 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTC CATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGAEST: gi|218503186|gb|FG945930.1|FG945930
genomic: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTCgtaagccaat ... gttgaattagCATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGA
EST: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTC CATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGAEST: gi|9886227|gb|AU102120.1|AU102120
genomic: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTCgtaagccaat ... gttgaattagCATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGA
EST: GCCAGCCAACTAAACCTGATTACCAGAGATGTACCTTGTGCTGTTTTCTC CATCCCACCACTATCCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGEST: gi|88217368|gb|CI217217.1|CI217217
genomic: GCCAGCCAACTAAACCTGATTA-CAGAGATGTACCTTGTGCTGTTTTCTCgtaagccaat ... gttgaattagCATCCCACCACTAT-CAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGG
EST: AGATGTACCTTGTGCTGTTTTCTC CATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGAEST: gi|27578226|gb|CB000921.1|CB000921
genomic: AGATGTACCTTGTGCTGTTTTCTCgtaagccaat ... gttgaattagCATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGA
EST: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTC CATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGAEST: gi|29675049|gb|CB671324.1|CB671324
genomic: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTCgtaagccaat ... gttgaattagCATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGA
EST: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTC CATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGAEST: gi|87015137|gb|CI273535.1|CI273535
genomic: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTCgtaagccaat ... gttgaattagCATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGA
EST: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTC CATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGAEST: gi|86594898|gb|CI258152.1|CI258152
genomic: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTCgtaagccaat ... gttgaattagCATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGA
EST: GGCCAGCCAACTAAACCTGATTACAGAGATGTATCTTGTGCTGTTTTCTC CATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGAEST: gi|33675534|gb|CF303773.1|CF303773
genomic: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTCgtaagccaat ... gttgaattagCATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGA
EST: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTC CATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGAEST: gi|58686026|gb|CK074713.1|CK074713
genomic: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTCgtaagccaat ... gttgaattagCATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGA
EST: ACAGAGATGTACCTTGTGCTGTTTTCTC CATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGAEST: gi|29625188|gb|CB630199.1|CB630199
genomic: ACAGAGATGTACCTTGTGCTGTTTTCTCgtaagccaat ... gttgaattagCATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGA
EST: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTC CATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGAEST: gi|4714976|gb|AU056093.1|AU056093
genomic: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTCgtaagccaat ... gttgaattagCATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGA
EST: GGCCAGCCAACTAAACCNGATTACAGANATGTACCTTGTGCTGTTT-CNC CATCCCACCACTATCAGTAGTGGGCTTGAGTGAEST: gi|86594937|gb|CI258191.1|CI258191
genomic: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTCgtaagccaat ... gttgaattagCATCCCACCACTATCAGTAGTGGGCTTGAGTGA
EST: GGCCAGCCAACTAAACCTGATTACAGAGATGTATCTTGTGCTGTTTTCTC CATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGAEST: gi|87014199|gb|CI273389.1|CI273389
genomic: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTCgtaagccaat ... gttgaattagCATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGA
EST: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTC CATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGAEST: gi|396941644|gb|HO188301.1|HO188301
genomic: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTCgtaagccaat ... gttgaattagCATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGA
EST: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTC CATCCCACCACTATCAGTAGTGGGGCTTGAGTGAACAGCAGGCTTTGGAGGEST: gi|88845181|gb|CI084106.1|CI084106
genomic: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTCgtaagccaat ... gttgaattagCATCCCACCACTATCAGTAGT-GGGCTTGAGTGAACAGCAGGCTTTGGAGG
EST: TGTGCTGTTTTCTC CATCCCACCACTATCAGTAGTGGGCTTGAGTGAACACCAGGCTTTGGAGGAEST: gi|218481326|gb|FG969724.1|FG969724
genomic: TGTGCTGTTTTCTCgtaagccaat ... gttgaattagCATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGA
EST: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTC CATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGAEST: gi|86430740|gb|CI083163.1|CI083163
genomic: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTCgtaagccaat ... gttgaattagCATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGA
EST: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTC CATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGA
genomic: GGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTCgtaagccaat ... gttgaattagCATCCCACCACTATCAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTCgtaagccaataaaccttgattgttctctgttatctccagtttttgtttttaactgaaacaagtagcatctacaagatggccacatatatacttcacaact
- - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT