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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAACATGGACCTCTGGAGCTTTGATGACATGCCCGTTAGCGATTTCTATTGAGGAATTCGAAGTCTTCTAGTCGGAGCATGTACACAGGGAAAAAAAAGgtaaggattatcaatttgattttttctctctgaatatgcacgattttttacattgctctaattttgcttgtgtttttcag

Basic information

species Oryza sativa
transcript LOC_Os02g54160.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218500214|gb|FG956469.1|FG956469
EST:     TGAGGAATTCGAAGTCTTCTAGTCGGAGCATGTACACAGGGNNNNNNNNG                         GAATAAATACTATTGGAGATTGGGAGGCACCTGCATGGCACCTTGGGGGTA
genomic: TGAGGAATTCGAAGTCTTCTAGTCGGAGCATGTACACAGGGAAAAAAAAGgtaaggatta ... tgtttttcagGAATAAATACTATTGGAGATTGGGAGGCACCTGCATGGCACCTTGGGGGTA
EST: gi|8956837|gb|BE230640.1|BE230640
EST:     TGAGGAATTCGAAGTCTTCTAGTCGGAGCATGTACACAGGGNNNNNNNNG                         GAATAAATACTATTGGAGATTGGGAGGCACCTGCATGGCACCTTGGGGGTA
genomic: TGAGGAATTCGAAGTCTTCTAGTCGGAGCATGTACACAGGGAAAAAAAAGgtaaggatta ... tgtttttcagGAATAAATACTATTGGAGATTGGGAGGCACCTGCATGGCACCTTGGGGGTA
EST: gi|86546246|gb|CI186452.1|CI186452
EST:     AGGGTAAATAAAG                         GAATAAATACTATTGGAGATTGGGAGGCACCTGCATGGCACCTTGGGGGTA
genomic: AGGGAAAAAAAAGgtaaggatta ... tgtttttcagGAATAAATACTATTGGAGATTGGGAGGCACCTGCATGGCACCTTGGGGGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAACATGGACCTCTGGAGCTTTGATGACATGCCCGTTAGCGATTTCTATTGAGGAATTCGAAGTCTTCTAGTCGGAGCATGTACACAGGGAAAAAAAAGgtaaggattatcaatttgattttttctctctgaatatgcacgattttttacattgctctaattttgcttgtgtttttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA