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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggattatcaatttgattttttctctctgaatatgcacgattttttacattgctctaattttgcttgtgtttttcagGAATAAATACTATTGGAGATTGGGAGGCACCTGCATGGCACCTTGGGGGTAGCATATCGTTATGTTTAGCTTAGATGCAAAAGGCTGCATCCTGAAACTC

Basic information

species Oryza sativa
transcript LOC_Os02g54160.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218500214|gb|FG956469.1|FG956469
EST:     TGAGGAATTCGAAGTCTTCTAGTCGGAGCATGTACACAGGGNNNNNNNNG                         GAATAAATACTATTGGAGATTGGGAGGCACCTGCATGGCACCTTGGGGGTA
genomic: TGAGGAATTCGAAGTCTTCTAGTCGGAGCATGTACACAGGGAAAAAAAAGgtaaggatta ... tgtttttcagGAATAAATACTATTGGAGATTGGGAGGCACCTGCATGGCACCTTGGGGGTA
EST: gi|8956837|gb|BE230640.1|BE230640
EST:     TGAGGAATTCGAAGTCTTCTAGTCGGAGCATGTACACAGGGNNNNNNNNG                         GAATAAATACTATTGGAGATTGGGAGGCACCTGCATGGCACCTTGGGGGTA
genomic: TGAGGAATTCGAAGTCTTCTAGTCGGAGCATGTACACAGGGAAAAAAAAGgtaaggatta ... tgtttttcagGAATAAATACTATTGGAGATTGGGAGGCACCTGCATGGCACCTTGGGGGTA
EST: gi|86546246|gb|CI186452.1|CI186452
EST:     AGGGTAAATAAAG                         GAATAAATACTATTGGAGATTGGGAGGCACCTGCATGGCACCTTGGGGGTA
genomic: AGGGAAAAAAAAGgtaaggatta ... tgtttttcagGAATAAATACTATTGGAGATTGGGAGGCACCTGCATGGCACCTTGGGGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctctgaatatgcacgattttttacattgctctaattttgcttgtgtttttcagGAATAAATACTATTGGAGATTGGGAGGCACCTGCATGGCACCTTGGGGGTAGCATATCGTTATGTTTAGCTTAGATGCAAAAGGCTGCATCCTGAAACTC
                              ctctaat  putative branch site (score: 3)
                                             tgtttttc  putative PPT
                 attttttacatt  TA-rich tract