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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttcaaaactaacttttctatattatagtttcaactaacttgtctatattatagtttcaactccttacataaacatgtctggtgtatgtacttctgtagCAAAGGAAAACTCACACGAGATAACAGTGGGCCTGGCAACTTGACTTGCCAGGTAACAACCTCATTCAGGGAGCCTATGCGCGGGATAAATAGAGATAGC

Basic information

species Oryza sativa
transcript LOC_Os02g53210.6
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86594268|gb|CI251140.1|CI251140
EST:     CTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAG                         CAAAGGAAAACTCACACGAGATAACAGTGGGCCTGGCAACTTGACTTGCCA
genomic: CTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAGgtaaccttcc ... acttctgtagCAAAGGAAAACTCACACGAGATAACAGTGGGCCTGGCAACTTGACTTGCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatattatagtttcaactccttacataaacatgtctggtgtatgtacttctgtagCAAAGGAAAACTCACACGAGATAACAGTGGGCCTGGCAACTTGACTTGCCAGGTAACAACCTCATTCAGGGAGCCTATGCGCGGGATAAATAGAGATAGC
                 tccttac  putative branch site (score: 2)
                                            tacttct  putative PPT
                    ttacataaa  TA-rich tract