Sequence
atgc intronic sequence ATGC exonic sequencegtaacaaaaatatgttgatgcggccagtaattatattaggaaataggatatatggaacttactttgactttctttttcagATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAG
Basic information
species | Oryza sativa |
transcript | LOC_Os02g53210.6 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os02g53210.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G046407_T01 (Zea mays), 3'ss of exon 6
gtaacaaaaatatgttgatgcggccagtaattatattaggaaataggatatatggaacttactttgactttctttttc----agATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAG
||| || || | |||| | | | || |||| || | || |||| |||||||||||| || | |||| ||||||||||||| | || |||||| ||||||||||||||||||||||||||||||| || ||||| || || ||
gtatcagaagttcgttggcacaggta--aagcatatgtaaaact---atctatgacacttactttgaccttttctttctttcagATTTTCCGTGCACTACGGAGCATTTTGTATGGTTTTGTTGCCTTCTTTTCAACATGTAATAGGCACCGACTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86594268|gb|CI251140.1|CI251140EST: AGATCTTCTGTACCAG ATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCA
genomic: AGATCTTCTGTACCAGgtaacaaaaa ... tctttttcagATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtaattatattaggaaataggatatatggaacttactttgactttctttttcagATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAG
cttactttgactttct CT-rich tract
ttatattaggaaata TA-rich tract