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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAACTGGTGCACAGCATACCACCTCTTGTGAAGGCACACGGAGGTATTCTAGTCAAAATCATCCTgtaagtccttacttttttaaaaaagttacagtctatcatgattttttttcatgaagtttaggggtaaaaatgacccttggaattgaaatcactagttcat...

Basic information

species Oryza sativa
transcript LOC_Os02g53210.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88252202|gb|CI350630.1|CI350630
EST:     ACCACCTCTTGTGAAGGCACAGCGGAGGTATTCTAGGTCAAAATCATCCT                         GTAACAACCTCATTCAGGGAGCCTATGCGCGGGATAAATAGAGATAGCCAG
genomic: ACCACCTCTTGTGAAGGCACA-CGGAGGTATTCTA-GTCAAAATCATCCTgtaagtcctt ... gacttgccagGTAACAACCTCATTCAGGGAGCCTATGCGCGGGATAAATAGAGATAGCCAG
EST: gi|88978988|gb|CI385243.1|CI385243
EST:     TCTTGT-AAGGCACACGGAGGTATTCTAGTCAAAATCATCCT                         GTAACAACCTCATTCAGGGAGCCTATGCGCGGGATAAATAGAGATAGCCAG
genomic: TCTTGTGAAGGCACACGGAGGTATTCTAGTCAAAATCATCCTgtaagtcctt ... gacttgccagGTAACAACCTCATTCAGGGAGCCTATGCGCGGGATAAATAGAGATAGCCAG
EST: gi|58606629|gb|CK034662.1|CK034662
EST:     CAAAATCATCCT                         GTAACAACCTCATTCAGAGAGCCTATGCGCGGGATAAATAGAGAGTAGCCA
genomic: CAAAATCATCCTgtaagtcctt ... gacttgccagGTAACAACCTCATTCAGGGAGCCTATGCGCGGGATAAATAGAGA-TAGCCA
EST: gi|86852556|gb|CI320481.1|CI320481
EST:     ATACCACCTCTTGTGAAGGCACACGGAGGTATTCTAGTCAAAATCATCCT                         GTAACAACCTCATTCAGGGAGCCTATGCGCGGGATAAATAGAGATAGCCAG
genomic: ATACCACCTCTTGTGAAGGCACACGGAGGTATTCTAGTCAAAATCATCCTgtaagtcctt ... gacttgccagGTAACAACCTCATTCAGGGAGCCTATGCGCGGGATAAATAGAGATAGCCAG
EST: gi|87028935|gb|CI351238.1|CI351238
EST:     ATACCACCTCTTGTGAAGGCACAC-GA-GTATTCTAGTCAAAATCATCCT                         GTAACAACCTCATTCAGGGAGCCTATGCGCGGGATAAATAGAGATAGCCAG
genomic: ATACCACCTCTTGTGAAGGCACACGGAGGTATTCTAGTCAAAATCATCCTgtaagtcctt ... gacttgccagGTAACAACCTCATTCAGGGAGCCTATGCGCGGGATAAATAGAGATAGCCAG