1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAAGCAGCAATTTTAGCTGATTCTACACCTGCTGTTCCTGCGGCTCTTCGAGTCGAGCCTAAACCTAAAAGCGATATCAGgtaagctgtgtgtaacaaaggttttacttccatctacagtccgtttgcttattatgggcacatgttgtctggacag
species | Oryza sativa |
transcript | LOC_Os02g42540.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCTGTTCCTGCGGCTCTTCGAGTCGAGCCTAAACCTAAAAGCGATATCAG GCAACAAGATCTCTTGAAGEST: gi|27547521|gb|CA765797.2|CA765797
genomic: GCTGTTCCTGCGGCTCTTCGAGTCGAGCCTAAACCTAAAAGCGATATCAGgtaagctgtg ... gtctggacagGCAACAAGATCTCTTGAAG
EST: GCTGTTCCTGCGGCTCTTCGAGTCGAGCCTAAACCTAAAAGCGATATCAG GCAACAAGATCTCTTGAAGAATATTGTCGGGATCAAACCGAAACGGACAAAEST: gi|33810840|gb|CF331311.1|CF331311
genomic: GCTGTTCCTGCGGCTCTTCGAGTCGAGCCTAAACCTAAAAGCGATATCAGgtaagctgtg ... gtctggacagGCAACAAGATCTCTTGAAGAATATTGTCGGGATCAAACCGAAACGGACAAA
EST: GCTGTTCCTGCGGTTCTTCGAGTCGAGCCTAAATCTAAAAGCGATATCAG GCAACAAGATCTCTTGAAGAATATTGTCGGGATCAAACCGAAACGGACAAA
genomic: GCTGTTCCTGCGGCTCTTCGAGTCGAGCCTAAACCTAAAAGCGATATCAGgtaagctgtg ... gtctggacagGCAACAAGATCTCTTGAAGAATATTGTCGGGATCAAACCGAAACGGACAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGCAGCAATTTTAGCTGATTCTACACCTGCTGTTCCTGCGGCTCTTCGAGTCGAGCCTAAACCTAAAAGCGATATCAGgtaagctgtgtgtaacaaaggttttacttccatctacagtccgtttgcttattatgggcacatgttgtctggacag
- - - - - - - - - - - - - - - GCTGTT