1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgcgattccggcgcatccttccttcttcccggtttattattctcccccattgatgttctgtgcgctttcggttgttcaatattgattttgggttctgcagATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAG
species | Oryza sativa |
transcript | LOC_Os02g42540.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAG ATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTEST: gi|88331773|gb|CI640804.1|CI640804
genomic: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGgtttgcgatt ... ggttctgcagATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCT
EST: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAG ATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTEST: gi|88331772|gb|CI640803.1|CI640803
genomic: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGgtttgcgatt ... ggttctgcagATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCT
EST: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAG ATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTEST: gi|88381604|gb|CI682270.1|CI682270
genomic: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGgtttgcgatt ... ggttctgcagATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCT
EST: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAG ATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTEST: gi|88330892|gb|CI638300.1|CI638300
genomic: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGgtttgcgatt ... ggttctgcagATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCT
EST: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAG ATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTEST: gi|88571094|gb|CI662467.1|CI662467
genomic: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGgtttgcgatt ... ggttctgcagATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCT
EST: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAG ATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTEST: gi|88453631|gb|CI682502.1|CI682502
genomic: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGgtttgcgatt ... ggttctgcagATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCT
EST: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAG ATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTEST: gi|88324974|gb|CI644986.1|CI644986
genomic: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGgtttgcgatt ... ggttctgcagATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCT
EST: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAG ATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTEST: gi|88576151|gb|CI670296.1|CI670296
genomic: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGgtttgcgatt ... ggttctgcagATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCT
EST: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAG ATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTEST: gi|27547521|gb|CA765797.2|CA765797
genomic: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGgtttgcgatt ... ggttctgcagATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCT
EST: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAG ATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTEST: gi|88501795|gb|CI695478.1|CI695478
genomic: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGgtttgcgatt ... ggttctgcagATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCT
EST: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAG ATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTEST: gi|88341833|gb|CI642977.1|CI642977
genomic: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGgtttgcgatt ... ggttctgcagATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCT
EST: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAG ATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTEST: gi|33810840|gb|CF331311.1|CF331311
genomic: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGgtttgcgatt ... ggttctgcagATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCT
EST: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAG ATAGGAA--GGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTEST: gi|88320199|gb|CI672378.1|CI672378
genomic: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGgtttgcgatt ... ggttctgcagATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCT
EST: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAG ATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCT
genomic: CATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGgtttgcgatt ... ggttctgcagATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCT
cccattgatgttctgtgcgctttcggttgttcaatattgattttgggttctgcagATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAG
tattgat putative branch site (score: 9)
ttcaatattgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcgattccggcgcatccttccttcttcccggtttattattctcccccattgatgttctgtgcgctttcggttgttcaatattgattttgggttctgcagATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG