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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAGCTTTTGGTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAGgtacatcatcatgtttgctgagaaaactgaactgctgatcactcgcagtttacaattttatctaaactgcatatttggtgttggtattccttttgcacaa...

Basic information

species Oryza sativa
transcript LOC_Os02g42520.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g42520.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G149272_T02 (Zea mays), 5'ss of exon 7
GGAAAGCTTTTGGTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAGgtacat-catcatgtttgctgagaaaactgaactgctgatcactcgcagtttacaattttatctaa--actgcat--atttggtgttggtattccttttgcacaa-----------------------------------------------------------------------------------------
||||| | ||||||||||| || |||||||| ||||| ||||||| |||||||||||| ||||||  | || ||||      |  |       |  |||      | | |   | ||||| |   | |   || ||   ||    |||||   ||    |  ||| |                                                                                         
GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacaccatgcaattggtcatctgctcatcgctctcttttggtatcatgcaattctgcttgactgctacactaataaactgttgac-ttataatcacactatgtatgagatgactatttggggaaataaacaaaatacagtgcatcatcgttccctaagtgcatgtaagtagattttttcatgcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27576860|gb|CA999554.1|CA999554
EST:     GTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAG                         GTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTG
genomic: GTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAGgtacatcatc ... atactttcagGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTG
EST: gi|27577599|gb|CB000294.1|CB000294
EST:     GTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAG                         GTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTG
genomic: GTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAGgtacatcatc ... atactttcagGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTG