1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtctgtatagtctatatatactgatctagcagtctcttttgctgttgccgccatgtctcgcaagttgctcggaacactgacattggaacgatctgatgtgtagTGTGGTTGAGAGTGTTGGTGAAGGTGTGACCGAGTTCGAAGTGGGAGACCATGTGCTCACCGTCTTCATCGGAGAGTGCATGAGCTGCAAGCACTGCGTT
species | Oryza sativa |
transcript | LOC_Os02g42520.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTCAAACCGATCTGTTCCCCAGAATTTTCGGGCACGAAGCATCCGG AGTGGTTGAGAGTGTTGGTGAAGGTGTGACCGAGTNCGAAGTGGGAGACCAEST: gi|88357025|gb|CI620913.1|CI620913
genomic: GCTCAAACCGATCTGTTCCCCAGAATTTTCGGGCACGAAGCATCCGGgtctgtatag ... tgatgtgtagTGTGGTTGAGAGTGTTGGTGAAGGTGTGACCGAGTTCGAAGTGGGAGACCA
EST: GCTCAAACCGATCTGTTCCCCAGAATTTTCGGGCACGAAGCATCCGG TGTGGTTGAGAGTGTTGGTGAAGGTGTGACCGACTTCGAAGTGGGAGACCAEST: gi|58602019|gb|CK012547.1|CK012547
genomic: GCTCAAACCGATCTGTTCCCCAGAATTTTCGGGCACGAAGCATCCGGgtctgtatag ... tgatgtgtagTGTGGTTGAGAGTGTTGGTGAAGGTGTGACCGAGTTCGAAGTGGGAGACCA
EST: GCTCAAACCGATCTGTTCCCCAGAATTTTCGGGCACGAAGCATCCGG AGTGGTTGAGAGTGTTGGTGAAGGTGTGACCGAGTTCGAAGTGGGAGACCAEST: gi|88425441|gb|CI567161.1|CI567161
genomic: GCTCAAACCGATCTGTTCCCCAGAATTTTCGGGCACGAAGCATCCGGgtctgtatag ... tgatgtgtagTGTGGTTGAGAGTGTTGGTGAAGGTGTGACCGAGTTCGAAGTGGGAGACCA
EST: GCTCAAACCGATCTGTTCCCCAGAATTTTCGGGCACGAAGCATCCGG TGTGGTTGAGAGTGTTGGTGAAGGTGTGACCGACCTTCGAAGTGGGAGAC-EST: gi|88449400|gb|CI582272.1|CI582272
genomic: GCTCAAACCGATCTGTTCCCCAGAATTTTCGGGCACGAAGCATCCGGgtctgtatag ... tgatgtgtagTGTGGTTGAGAGTGTTGGTGAAGGTGTGACCGAG-TTCGAAGTGGGAGACC
EST: GCTCAAACCGATCTGTTCCCCAGAATTTTCGGGCACGAAGCATCCGG TGTGGTTGATAGTGTTGGTGAAGGTGTGACCGAGTTCGAAGTGGGAGACCAEST: gi|58658973|gb|CK047653.1|CK047653
genomic: GCTCAAACCGATCTGTTCCCCAGAATTTTCGGGCACGAAGCATCCGGgtctgtatag ... tgatgtgtagTGTGGTTGAGAGTGTTGGTGAAGGTGTGACCGAGTTCGAAGTGGGAGACCA
EST: GCTCAAACCGATCTGTTCCCCAGAATTTTCGGGCACGAAGCATCCGG AGTGGTTGAGAGTGTTGGTGAAGGTGTGACCGAGTTCGAAGTGGGAGACCAEST: gi|29617893|gb|CB622905.1|CB622905
genomic: GCTCAAACCGATCTGTTCCCCAGAATTTTCGGGCACGAAGCATCCGGgtctgtatag ... tgatgtgtagTGTGGTTGAGAGTGTTGGTGAAGGTGTGACCGAGTTCGAAGTGGGAGACCA
EST: GCTCAAACCGATCTGTTCCCCAGAATTTTCGGGCACGAAGCATCCGG AGTGGTTGAGAGTGTTGGTGAAGGTGTGACCGAGTTCGAAGTGGGAGACCA
genomic: GCTCAAACCGATCTGTTCCCCAGAATTTTCGGGCACGAAGCATCCGGgtctgtatag ... tgatgtgtagTGTGGTTGAGAGTGTTGGTGAAGGTGTGACCGAGTTCGAAGTGGGAGACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtatagtctatatatactgatctagcagtctcttttgctgttgccgccatgtctcgcaagttgctcggaacactgacattggaacgatctgatgtgtagTGTGGTTGAGAGTGTTGGTGAAGGTGTGACCGAGTTCGAAGTGGGAGACCATGTGCTCACCGTCTTCATCGGAGAGTGCATGAGCTGCAAGCACTGCGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC