1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgtgtacgacaaacagaactatttgatctcttttgcctgttgtgttaaaaaagactgatgcattacttgatatatcaacgtgcagGCTTGGCCAGGAAAGAAGATTACCCGCACATTACCTACTACTGCCCCCATTGTCATGCGCTGAACACATCAAAGCAATCTTTGGGGCAACATTCTGGCTC
species | Oryza sativa |
transcript | LOC_Os02g41990.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCGTCGCAGTCGTACGCTTTGATATGTGGAAGCTGTCATATGCATAATG GCTTGGCCAGGAAAGAAGATTACCCGCACATTACCTACTACTGCCCCCATTEST: gi|87026863|gb|CI259516.1|CI259516
genomic: TCCGTCGCAGTCGTACGCTTTGATATGTGGAAACTGTCATATGCATAATGgtgtgtacga ... caacgtgcagGCTTGGCCAGGAAAGAAGATTACCCGCACATTACCTACTACTGCCCCCATT
EST: TCCGTCGCAGTCGTACGCTTTGATATGTGGAAACTGTCATATGCATAATG GCTTGGCCAGGAAAGAAGATTACCCGCACATTACCTACTACTGCCCCCATTEST: gi|29680846|gb|CB677121.1|CB677121
genomic: TCCGTCGCAGTCGTACGCTTTGATATGTGGAAACTGTCATATGCATAATGgtgtgtacga ... caacgtgcagGCTTGGCCAGGAAAGAAGATTACCCGCACATTACCTACTACTGCCCCCATT
EST: TCCGTCGCAGTCGTACGCTTTGATATGTGGAAACTGTCATATGCATAATG GCTTGGCCAGGAAAGAAGATTACCCGCACATTACCTACTACTGCCCCCATTEST: gi|38477989|gb|CF962122.1|CF962122
genomic: TCCGTCGCAGTCGTACGCTTTGATATGTGGAAACTGTCATATGCATAATGgtgtgtacga ... caacgtgcagGCTTGGCCAGGAAAGAAGATTACCCGCACATTACCTACTACTGCCCCCATT
EST: TACGCTTTGATATGTGGAAACTGTCATATGCATAATG GCTTGGCCAGGAAAGAAGATTACCCGCACATTACCTACTACTGCCCCCATTEST: gi|87029215|gb|CI276483.1|CI276483
genomic: TACGCTTTGATATGTGGAAACTGTCATATGCATAATGgtgtgtacga ... caacgtgcagGCTTGGCCAGGAAAGAAGATTACCCGCACATTACCTACTACTGCCCCCATT
EST: TCCGTCGCAGTCGTACGCTTTGATATGTGGAAACTGTCATATGCATAATG GCTTGGCCAGGAAAGAAGATTACCCGCACATTACCTACTACTGCCCCCATTEST: gi|88515692|gb|CI443346.1|CI443346
genomic: TCCGTCGCAGTCGTACGCTTTGATATGTGGAAACTGTCATATGCATAATGgtgtgtacga ... caacgtgcagGCTTGGCCAGGAAAGAAGATTACCCGCACATTACCTACTACTGCCCCCATT
EST: ATGTGGAAACTGTCATATGCATAATG GCTTGGCCAGGAAAGAAGATTACCCGCACATTACCTACTACTGCCCCCATT
genomic: ATGTGGAAACTGTCATATGCATAATGgtgtgtacga ... caacgtgcagGCTTGGCCAGGAAAGAAGATTACCCGCACATTACCTACTACTGCCCCCATT
ttttgcctgttgtgttaaaaaagactgatgcattacttgatatatcaacgtgcagGCTTGGCCAGGAAAGAAGATTACCCGCACATTACCTACTACTGCCCCCATTGTCATGCGCTGAACACATCAAAGCAATCTTTGGGGCAACATTCTGGCTC
attacttgatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtacgacaaacagaactatttgatctcttttgcctgttgtgttaaaaaagactgatgcattacttgatatatcaacgtgcagGCTTGGCCAGGAAAGAAGATTACCCGCACATTACCTACTACTGCCCCCATTGTCATGCGCTGAACACATCAAAGCAATCTTTGGGGCAACATTCTGGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA