1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagtggccattactcgatctatagaagttcagaacttggaataaaattttatcatgttatatgcccaattaatagtaaattcaccaagacctgcaaatgtgcagAAATATGACCTAGATCCAGCTGCAAAGGCTGCGGCAGCATCGGTATTGGCATCTAAGCTCGGAGAGGAAACTGGCTTAAAAGTACATGTTGGTGAAGAAC
species | Oryza sativa |
transcript | LOC_Os02g41990.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGAGCTAAAAGAGAGAACTAATTATTACCTCACCCAACAGCTTATTCAG AAATATGACCTAGATCCAGCTGCAAAGGCTGCGGCAGCATCGGTATTGGCAEST: gi|58609334|gb|CK037367.1|CK037367
genomic: ATGAGCTAAAAGAGAGAACTAATTATTACCTCACCCAACAGCTTATTCAGgtgagtggcc ... aaatgtgcagAAATATGACCTAGATCCAGCTGCAAAGGCTGCGGCAGCATCGGTATTGGCA
EST: ATGAGCTAAAAGAGAGAACTAATGGTTACCTCACCCAACAGCTTATTCAG AAATATGACCTAGATCCAGCTGCAAAGGCTGCGGCAGCATCGGTATTGGCAEST: gi|218500782|gb|FG951177.1|FG951177
genomic: ATGAGCTAAAAGAGAGAACTAATTATTACCTCACCCAACAGCTTATTCAGgtgagtggcc ... aaatgtgcagAAATATGACCTAGATCCAGCTGCAAAGGCTGCGGCAGCATCGGTATTGGCA
EST: ATGAGCTAAAAGAGAGAACTAATTATTACCTCACCCAACAGCTTATTCAG AAATATGACCTAGATCCAGCTGCAAAGGCTGCGGCAGCATCGGTATTGGCAEST: gi|427975|gb|D24121.1|D24121
genomic: ATGAGCTAAAAGAGAGAACTAATTATTACCTCACCCAACAGCTTATTCAGgtgagtggcc ... aaatgtgcagAAATATGACCTAGATCCAGCTGCAAAGGCTGCGGCAGCATCGGTATTGGCA
EST: ATGAGCTAAAAGAGAGAACTAATTATTACCTCACCCAACAGCTTATTCAG AAATATGACCTAGATCCAGCTGCAAAGGCTGCGGCAG-ATNCGGTATTGGC
genomic: ATGAGCTAAAAGAGAGAACTAATTATTACCTCACCCAACAGCTTATTCAGgtgagtggcc ... aaatgtgcagAAATATGACCTAGATCCAGCTGCAAAGGCTGCGGCAGCAT-CGGTATTGGC
tatcatgttatatgcccaattaatagtaaattcaccaagacctgcaaatgtgcagAAATATGACCTAGATCCAGCTGCAAAGGCTGCGGCAGCATCGGTATTGGCATCTAAGCTCGGAGAGGAAACTGGCTTAAAAGTACATGTTGGTGAAGAAC
aattaat putative branch site (score: 23)
aattaatagtaaattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtggccattactcgatctatagaagttcagaacttggaataaaattttatcatgttatatgcccaattaatagtaaattcaccaagacctgcaaatgtgcagAAATATGACCTAGATCCAGCTGCAAAGGCTGCGGCAGCATCGGTATTGGCATCTAAGCTCGGAGAGGAAACTGGCTTAAAAGTACATGTTGGTGAAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC