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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTGTTCAAGGACGCCGTCGACATCTTCGTCGAGCGCTACCGCGGCATGGCCATCGCCGCCGTCGCCGgtaaacactttttgatcagtactactctttattgtcatttgattattgtttctgtcgcgcggagccggagaggtgggcagtcaggggcggagaggcggtg...

Basic information

species Oryza sativa
transcript LOC_Os02g40010.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g40010.4 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G071846_T01 (Zea mays), 5'ss of exon 2
AACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTGTTCAAGGACGCCGTCGACATCTTCGTCGAGCGCTACCGCGGCATGGCCATCGCCGCCGTCGCCGgta-------aacactttttgatcagtactac-tctttattgtcatttgattattgtttctgtcgcgcggagccggagaggtgggcagtcaggggcggagaggcggtg
|||||||||||  ||||||||||||||||  ||||||||||||||||||||||| | |||||||||||||||||||| |||  ||||| ||||||||||||||       | |||     ||     ||  |  ||    || | |    |   |   ||| |  ||    | ||    |  |  ||||    ||||| |        
AACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCAAGGACGCCGTCGACCTGTTCGTCGAGCGCTACCGCGGGATGCGCATCGACGCCGTCGCCGgtacgtaaccagcacagcccgacggacaccgcacctcccctggcctcgcctcgattcgtctcttccggccggtcgactcgacgaccagtatccggcggcg--------

upper sequence: LOC_Os02g40010.4 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G179810_T03 (Zea mays), 5'ss of exon 2
AACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTGTTCAAGGACGCCGTCGACATCTTCGTCGAGCGCTACCGCGGCATGGCCATCGCCGCCGTCGCCGgtaaacactt---tttgatcagtactactctttattgtcatttgattat-tgtttctgtcgcgcggagccggagaggtgggcagtcaggggcggagaggcggtg
|||||||||||  ||||||||||||||||  ||||||||||||||||||||||| | ||||||||||| |||||||| |||| ||||| ||||||||||||||| ||         ||     ||  | | |  |        |   |  | | |||| || | |  | | |    |||   |||  |  ||   | ||     
AACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCAAGGACGCCGTCGACCTGTTCGTCGAGCGGTACCGCGGGATGGGCATCGACGCCGTCGCCGgtaagcagcagaacccgacggacacctcccctagtatcgtcccgcccacctctctctgccgagtgccgactgccgagtgccgagtaggcagccttgcggt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88211248|gb|CI210888.1|CI210888
EST:     CGACATCTTCGTCGAGCGCTACCGCGGCATGGCCATCGCCGCCGTCGCCG                         GGATTGAGGCTAGGGGGTTCATATTTGGCCCGGCGATCGCGCTGGCAATTG
genomic: CGACATCTTCGTCGAGCGCTACCGCGGCATGGCCATCGCCGCCGTCGCCGgtaaacactt ... gtttgaccagGGATTGAGGCTAGGGGGTTCATATTTGGCCCGGCGATCGCGCTGGCAATTG