Sequence
atgc intronic sequence ATGC exonic sequencegtccgtctctcccctctcggttcgccagtttgccatatgtgcaaatacctagtggtatctgaatatctgcgcgcgcggcgtgcatgcagGCATCATGTTCAACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTGTTCAAGGACGCCGTCGACATCTTCGTCGAGCGCTACCGCGGCATGGCCATCGC
Basic information
species | Oryza sativa |
transcript | LOC_Os02g40010.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os02g40010.4 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G071846_T01 (Zea mays), 3'ss of exon 1
---------------------gtccgtctctcccctctcggttcgccagtt--tgccatatgtgcaaatacctagtggtatctgaatatctgcgcgcgcggcgtg---------ca--------tgcagGCATCATGTTCAACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTGTTCAAGGACGCCGTCGACATCTTCGTCGAGCGCTACCGCGGCATGGCCATCGC
|| ||| | |||||| |||| | ||||| ||||| | ||| || | || || ||| ||| || ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||| |||||
gtactacgcctttcttcactcactcg-ctcactcctctccacacgccttctgctgccaattgtgccgcccgccagtaacgccttccttgctctgcatgcgccgtcgttgggggccacgggacgctgcagGCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCAAGGACGCCGTCGACCTGTTCGTCGAGCGCTACCGCGGGATGCGCATCGA
upper sequence: LOC_Os02g40010.4 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G179810_T03 (Zea mays), 3'ss of exon 1
---------gtccgt-ctctcccctctcggttcgccagtttgccatatgtgcaaatacctagtggtatc-tgaatatctgcgcgcgcggcgtgcatgcagGCATCATGTTCAACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTGTTCAAGGACGCCGTCGACATCTTCGTCGAGCGCTACCGCGGCATGGCCATCGC
| |||| || | | || | | | | | | || | | | ||| || | | | ||| ||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | ||||||||||| |||||||| |||| |||||
agtaacgctgaccgttcttttttttttctgcttcgcgcgctcttgtgtatgtgtgtgtgtgcatgcatcatgcgtgcgccgttggggggcttgcggtcagGCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCAAGGACGCCGTCGACCTGTTCGTCGAGCGGTACCGCGGGATGGGCATCGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88211248|gb|CI210888.1|CI210888EST: ACGCCATCCGCGTCGTCCCCCACTTCCCCAAGCAAG GCATCATGTTTAACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTGTTCA
genomic: ACGCCATCCGCGTCGTCCCCCACTTCCCCAAGCAAGgtccgtctct ... gtgcatgcagGCATCATGTTCAACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTGTTCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatgtgcaaatacctagtggtatctgaatatctgcgcgcgcggcgtgcatgcagGCATCATGTTCAACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTGTTCAAGGACGCCGTCGACATCTTCGTCGAGCGCTACCGCGGCATGGCCATCGC
tgaatat TA-rich tract