Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGCTCAGCACGGCCTTCAGTGCGCTCCCGACCTCGCCGGCCGACGTGCGGGTCGTCACCGCCGACGGGAGCGGCATCCGCGCGCACTCGTCTGTTCTTgtaagcgaaggaagagatcgccgttgcttcgatgcgatttttctcgttcttgtttcgaatttctgatgaatttcgctttgtttttctgtttggaatctggtggtgtgatgtgatgtgatggcgaag

Basic information

species Oryza sativa
transcript LOC_Os02g38320.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g38320.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G121115_T01 (Zea mays), 5'ss of exon 1
GGCGCTCAGCACGGCCTTCAGTGCGCTCCCGACCTCGCCGGCCGACGTGCGGGTCGTCACCGCCGACGGGAGCGGCATCCGCGCGCACTCGTCTGTTCTTgtaagcgaaggaagagatcgccgttgcttcgatgcg--atttttctcgttcttgtttcgaatttctgatgaa-tttcgctttgtttttctgtttg-gaatctggtggtgtgatgtgatgtgatggcgaag
|| | || || |||  |||  ||| |||| | | |||||||||||||| || ||||||||  |||||||||||| |||||| ||||| |  || |||||||| |||||  || |   ||    |   |||  || |  | ||    ||  |   |  |      ||||| |  |||| |  | ||     ||  |  |||  |     |                     
GGTGTTCTGCGCGGATTTCGCTGCCCTCCGGCCGTCGCCGGCCGACGTCCGTGTCGTCACGTCCGACGGGAGCGCCATCCGTGCGCATTGCTCCGTTCTTgtgagcgagcgaggctttcctgttcctttccgtgtgtcaattgatgcggaccgatcacccgacgctgataaggtttctcggtattcccgcgtgcgtaaattcgaccaag---------------------