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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgaaggaagagatcgccgttgcttcgatgcgatttttctcgttcttgtttcgaatttctgatgaatttcgctttgtttttctgtttggaatctggtggtgtgatgtgatgtgatggcgaagGCCTCGGCGTCGCCGGTGCTGGAGCGGATGATCGAGCAGGCGCCGCGCGGCGGCGTCGTCCCGATCGCCGGCGCCTCCACCGGCGCCGTCGTCGTCTTCC

Basic information

species Oryza sativa
transcript LOC_Os02g38320.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g38320.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G121115_T01 (Zea mays), 3'ss of exon 1
gtaagcgaaggaagagatcgccgttgcttcgatgcg--atttttctcgttcttgtttcgaatttctgatgaatttcgctttgtttttctgtttggaatctggtggtgtgatgtgatgtgatggcgaagGCCTCGGCGTCGCCGGTGCTGGAGCGGATGATCGAG--CAGGCGCCGCGCG-GCGGCGTCGTCCCGATCGCCGGCGCCTCCACCGGCGCCGTCGTCGTCTTCC
|| |||||  || |   ||    |   |||  || |  | ||    ||  |   |  |      ||||| |  ||  ||  || || | |  ||                 || |  |   | | |||||| ||||||| ||||||||||||||||||||||||  || |||||||| | | | || || |   | || |  || |  |  ||   |||  | || |    
gtgagcgagcgaggctttcctgttcctttccgtgtgtcaattgatgcggaccgatcacccgacgctgataaggttt-ctcggtattcccgcgtg----------------cgtaaatt--cgaccaagGCCGCGGCGTCCCCGGTGCTGGAGCGGATGATCGAGGGCACGCGCCGCGGGTGGGACGCCGGCTGCACCGTCCACGTCCTCGGCGCGCCCGCTGACGCCG---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgctttgtttttctgtttggaatctggtggtgtgatgtgatgtgatggcgaagGCCTCGGCGTCGCCGGTGCTGGAGCGGATGATCGAGCAGGCGCCGCGCGGCGGCGTCGTCCCGATCGCCGGCGCCTCCACCGGCGCCGTCGTCGTCTTCC
     tttgttttt  TA-rich tract