1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaatgcttttgtgattggctttcagcttcttctgcacataaagagattcctttcaataaatgaatataagctaaattaacaagaagaattcttgttccagGGTCACTAGACTTGTTCATGGCTTCGTGCTGCGACGGGCCAGCTACTGTTCCAACAAATCCGGAGCTTTTTTTTTTTTCGTCTTGGTCTGTTTACCAATT
species | Oryza sativa |
transcript | LOC_Os02g36740.8 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
attcctttcaataaatgaatataagctaaattaacaagaagaattcttgttccagGGTCACTAGACTTGTTCATGGCTTCGTGCTGCGACGGGCCAGCTACTGTTCCAACAAATCCGGAGCTTTTTTTTTTTTCGTCTTGGTCTGTTTACCAATT
aattaac putative branch site (score: 9)
ttcttgttcc putative PPT
tttcaataaatgaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatgcttttgtgattggctttcagcttcttctgcacataaagagattcctttcaataaatgaatataagctaaattaacaagaagaattcttgttccagGGTCACTAGACTTGTTCATGGCTTCGTGCTGCGACGGGCCAGCTACTGTTCCAACAAATCCGGAGCTTTTTTTTTTTTCGTCTTGGTCTGTTTACCAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
gaatgct
- - - - ttgtgat
- - - - - - - - -gctttca
- - - - - - - - - - - - - - cttctgc
- - - - - - - - - - - - - - - - - -acataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agctaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaga