1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttcgtttgagcatgtgcatcattctttatcacagggtatatccttaattttcacctgttttatttattaacagtttacattatttactttggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATGGAAGGACTATGCAATTCGCCGTAGCGCCAGAATCTCCTACCACACCTC
species | Oryza sativa |
transcript | LOC_Os02g36740.8 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCCAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|27576199|gb|CA998893.1|CA998893
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|27578072|gb|CB000767.1|CB000767
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|29686717|gb|CB682992.1|CB682992
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGNGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCCATCATACTCCACCGAAATEST: gi|27554462|gb|CA998362.1|CA998362
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GGAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
aattttcacctgttttatttattaacagtttacattatttactttggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATGGAAGGACTATGCAATTCGCCGTAGCGCCAGAATCTCCTACCACACCTC
tattaac putative branch site (score: 18)
tgttttatttattaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcgtttgagcatgtgcatcattctttatcacagggtatatccttaattttcacctgttttatttattaacagtttacattatttactttggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATGGAAGGACTATGCAATTCGCCGTAGCGCCAGAATCTCCTACCACACCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - -gtgcatc