1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttcgtttgagcatgtgcatcattctttatcacagggtatatccttaattttcacctgttttatttattaacagtttacattatttactttggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATGGAAGGACTATGCAATTCGCCGTAGCGCCAGAATCTCCTACCACACCTC
species | Oryza sativa |
transcript | LOC_Os02g36740.5 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|86835610|gb|CI348067.1|CI348067
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|3767600|gb|AU031627.1|AU031627
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: CTTGGGCTATTAGTATCATGCAACGTCAAAGACCAAAGACAG GAAGAAGCAATGCTTCTACCCAACTGAAGTGGCAATCATACTCCACCGAAEST: gi|33809701|gb|CF330740.1|CF330740
genomic: CTTGGGCTATTAGTATCATGCAACGTCAAAGA-CAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTA-CCAACTGAAGTGGCAATCATACTCCACCGAA
EST: GTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAGGTGGCAATCATACTCCACCGAAATEST: gi|88441525|gb|CI554749.1|CI554749
genomic: GTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|86887217|gb|CI326032.1|CI326032
genomic: ATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTGTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|29677125|gb|CB673400.1|CB673400
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|88269118|gb|CI380416.1|CI380416
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|3766998|gb|AU031108.1|AU031108
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGNCAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCCATACTCCACCGAAAEST: gi|88240577|gb|CI239739.1|CI239739
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAAT-CATACTCCACCGAAA
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|86883386|gb|CI337998.1|CI337998
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|88479704|gb|CI416975.1|CI416975
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|88428597|gb|CI553119.1|CI553119
genomic: ACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
aattttcacctgttttatttattaacagtttacattatttactttggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATGGAAGGACTATGCAATTCGCCGTAGCGCCAGAATCTCCTACCACACCTC
tattaac putative branch site (score: 1)
tgttttatttattaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcgtttgagcatgtgcatcattctttatcacagggtatatccttaattttcacctgttttatttattaacagtttacattatttactttggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATGGAAGGACTATGCAATTCGCCGTAGCGCCAGAATCTCCTACCACACCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG