1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttggtatcttcattcatgaaaaatcttctttcgtatcctagtacttttgtgaataaatttctgagtgaatataaaataatccctaagcacaattcttaacttctcgtgtctctatctcgtcctattctccagTAGTGGAGATTGGTCTATCTCTGGCAATCGGTTGGATTTACATGATCCTAGAATCTTGGCTATGGCTGCCGCTCAACACCGTTTACTTGAAGATGAGTAT
species | Oryza sativa |
transcript | LOC_Os02g36740.5 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TATACTGCCCCACCCCAGGTACATCATGATGAGACTACTATAGAGATCAG TAGTGGAGATTGGTCTATCTCTGGCAATCGGTTGGATTTACATGATCCTAGEST: gi|3767112|gb|AU031222.1|AU031222
genomic: TATACTGCCCCACCCCAGGTACATCATGATGAGACTACTATAGAGATCAGgttggtatct ... tattctccagTAGTGGAGATTGGTCTATCTCTGGCAATCGGTTGGATTTACATGATCCTAG
EST: TATACTGCCCCACCCCAGGTACATCATGATGAGACTACTATAGAGATCAG TAGTGGAGATTGGTCTATCTCTGGCAATCGGTTGGATTTACATGATCCTAGEST: gi|29677125|gb|CB673400.1|CB673400
genomic: TATACTGCCCCACCCCAGGTACATCATGATGAGACTACTATAGAGATCAGgttggtatct ... tattctccagTAGTGGAGATTGGTCTATCTCTGGCAATCGGTTGGATTTACATGATCCTAG
EST: TATACTGCCCCACCCCAGGTACATCATGATGAGACTACTATAGAGATCAG TAGTGGAGATTGGTCTATCTCTGGCAATCGGTTGGATTTACATGATCCTAG
genomic: TATACTGCCCCACCCCAGGTACATCATGATGAGACTACTATAGAGATCAGgttggtatct ... tattctccagTAGTGGAGATTGGTCTATCTCTGGCAATCGGTTGGATTTACATGATCCTAG
aatccctaagcacaattcttaacttctcgtgtctctatctcgtcctattctccagTAGTGGAGATTGGTCTATCTCTGGCAATCGGTTGGATTTACATGATCCTAGAATCTTGGCTATGGCTGCCGCTCAACACCGTTTACTTGAAGATGAGTAT
tcttaac putative branch site (score: 2)
tctctatctcgtccta putative PPT
aattcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtatcttcattcatgaaaaatcttctttcgtatcctagtacttttgtgaataaatttctgagtgaatataaaataatccctaagcacaattcttaacttctcgtgtctctatctcgtcctattctccagTAGTGGAGATTGGTCTATCTCTGGCAATCGGTTGGATTTACATGATCCTAGAATCTTGGCTATGGCTGCCGCTCAACACCGTTTACTTGAAGATGAGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG