1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttcgtttgagcatgtgcatcattctttatcacagggtatatccttaattttcacctgttttatttattaacagtttacattatttactttggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATGGAAGGACTATGCAATTCGCCGTAGCGCCAGAATCTCCTACCACACCTC
species | Oryza sativa |
transcript | LOC_Os02g36740.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TATCATGGCTTTGGGCTATTAGTATCATGCAACGTCAAAGACTAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|29663450|gb|CB659725.1|CB659725
genomic: TATCATGGC-TTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|3767600|gb|AU031627.1|AU031627
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: CTTGGGCTATTAGTATCATGCAACGTCAAAGACCAAAGACAG GAAGAAGCAATGCTTCTACCCAACTGAAGTGGCAATCATACTCCACCGAAEST: gi|58602522|gb|CK013050.1|CK013050
genomic: CTTGGGCTATTAGTATCATGCAACGTCAAAGA-CAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTA-CCAACTGAAGTGGCAATCATACTCCACCGAA
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCCAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|86883386|gb|CI337998.1|CI337998
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|29677125|gb|CB673400.1|CB673400
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|33809701|gb|CF330740.1|CF330740
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: GTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAGGTGGCAATCATACTCCACCGAAATEST: gi|33793334|gb|CF322548.1|CF322548
genomic: GTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|86869793|gb|CI316521.1|CI316521
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|88441525|gb|CI554749.1|CI554749
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|88269118|gb|CI380416.1|CI380416
genomic: ATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|29686718|gb|CB682993.1|CB682993
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCCCCGAAATEST: gi|27576199|gb|CA998893.1|CA998893
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|3766998|gb|AU031108.1|AU031108
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGNCAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCCATACTCCACCGAAAEST: gi|88841916|gb|CI081172.1|CI081172
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAAT-CATACTCCACCGAAA
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|27578072|gb|CB000767.1|CB000767
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|88479704|gb|CI416975.1|CI416975
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|29686717|gb|CB682992.1|CB682992
genomic: ACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGNGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCCATCATACTCCACCGAAATEST: gi|88240577|gb|CI239739.1|CI239739
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|27554462|gb|CA998362.1|CA998362
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GGAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|86887217|gb|CI326032.1|CI326032
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTGTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|88243846|gb|CI242968.1|CI242968
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|86835610|gb|CI348067.1|CI348067
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATEST: gi|88428597|gb|CI553119.1|CI553119
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
EST: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAG GAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
genomic: ATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGgttggtgact ... ggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAAT
aattttcacctgttttatttattaacagtttacattatttactttggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATGGAAGGACTATGCAATTCGCCGTAGCGCCAGAATCTCCTACCACACCTC
tattaac putative branch site (score: 6)
tgttttatttattaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcgtttgagcatgtgcatcattctttatcacagggtatatccttaattttcacctgttttatttattaacagtttacattatttactttggtgaatcagGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATGGAAGGACTATGCAATTCGCCGTAGCGCCAGAATCTCCTACCACACCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG