1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttgattccatatgcatttaattattcatgttttcttgcgatttaactgtgagctttcttgctgtaaatcagattatgagtttttcttctctgttgttcagTCATACAAGCCTGGCTATACTGCCCCACCCCAGGTACATCATGATGAGACTACTATAGAGATCAG
species | Oryza sativa |
transcript | LOC_Os02g36740.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACATATTCTGTGAAATCTGCCACGTG TCATACAAGCCTGGCTATACTGCCCCACCCCAGGTACATCATGATGAGACTEST: gi|29677125|gb|CB673400.1|CB673400
genomic: ACATAATCTGTGAAATCTGCCACGTGgtaagtaatt ... tgttgttcagTCATACAAGCCTGGCTATACTGCCCCACCCCAGGTACATCATGATGAGACT
EST: AAAGATGGTGCAATGAGAAAGGAGACATAATCTGTGAAATCTGCCACGTG TCATACAAGCCTGGCTATACTGCCCCACCCCAGGTACATCATGATGAGACTEST: gi|27576199|gb|CA998893.1|CA998893
genomic: AAAGATGGTGCAATGAGAAAGGAGACATAATCTGTGAAATCTGCCACGTGgtaagtaatt ... tgttgttcagTCATACAAGCCTGGCTATACTGCCCCACCCCAGGTACATCATGATGAGACT
EST: AAAGATGGTGCAATGAGAAAGGAGACATAATCTGTGAAATCTGCCACGTG TCATACAAGCCTGGCTATACTGCCCCACCCCAGGTACATCATGATGAGACTEST: gi|27578072|gb|CB000767.1|CB000767
genomic: AAAGATGGTGCAATGAGAAAGGAGACATAATCTGTGAAATCTGCCACGTGgtaagtaatt ... tgttgttcagTCATACAAGCCTGGCTATACTGCCCCACCCCAGGTACATCATGATGAGACT
EST: AAGATGGTGCAATGAGAAAGGAGACATAATCTGTGAAATCTG-CACCGTG TCATACAAGCCTGGCTATACTGCCCCACCCCAGGTACATCATGATGAGACEST: gi|29686717|gb|CB682992.1|CB682992
genomic: AAGATGGTGCAATGAGAAAGGAGACATAATCTGTGAAATCTGCCA-CGTGgtaagtaatt ... tgttgttcagTCATACAAGCCTGGCTATACTGCCCCACCCCAGGTACATCATGATGAGAC
EST: AAAGATGGTGCAATGAGAAAGGAGACATAATCTGTGAAATCTGCCACGTG TCATACAAGCCTGGCTATACTGCCCCACCCCAGGTACATCATGATGAGACTEST: gi|27554462|gb|CA998362.1|CA998362
genomic: AAAGATGGTGCAATGAGAAAGGAGACATAATCTGTGAAATCTGCCACGTGgtaagtaatt ... tgttgttcagTCATACAAGCCTGGCTATACTGCCCCACCCCAGGTACATCATGATGAGACT
EST: AAAGATGGTGCAATGAGAAAGGAGACATAATCTGTGAAATCTGCCACGTG TCATACAAGCCTGGCTATACTGCCCCACCCCAGGTACATCATGATGAGACTEST: gi|58695300|gb|CK083987.1|CK083987
genomic: AAAGATGGTGCAATGAGAAAGGAGACATAATCTGTGAAATCTGCCACGTGgtaagtaatt ... tgttgttcagTCATACAAGCCTGGCTATACTGCCCCACCCCAGGTACATCATGATGAGACT
EST: ATCTGCCACGTG TCATACAAGCCTGGCTATACTGCCCCACCCCAGGTACATCATGATGAGACT
genomic: ATCTGCCACGTGgtaagtaatt ... tgttgttcagTCATACAAGCCTGGCTATACTGCCCCACCCCAGGTACATCATGATGAGACT
ctgtgagctttcttgctgtaaatcagattatgagtttttcttctctgttgttcagTCATACAAGCCTGGCTATACTGCCCCACCCCAGGTACATCATGATGAGACTACTATAGAGATCAG
tttttcttctctgttg CT-rich tract
tttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgattccatatgcatttaattattcatgttttcttgcgatttaactgtgagctttcttgctgtaaatcagattatgagtttttcttctctgttgttcagTCATACAAGCCTGGCTATACTGCCCCACCCCAGGTACATCATGATGAGACTACTATAGAGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA