1 5' 3' | 2 5' 3' | 3 5' 3' |
...tctgattttctgtgttatttgtactacaaacggatagcatgacattgagtaacttcaacatgttataactttaacacaatttttcccattctttctgcagTACTACTATGGCTGCTCACAGCAGCCTGCATCAAGACTGGCCGGCCACAAATTGCAAGGCGTGCAATTGACTTAGCTGAGAGAAGGCTGTTGAAGGATGG
species | Oryza sativa |
transcript | LOC_Os02g34560.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATCTTGGCCAG TACTACTATGGCTGCTCACAGCAGCCTGCATCAAGACTGGCCGGCCACAAAEST: gi|38481310|gb|CF965399.1|CF965399
genomic: GATCTTGGCCAGgttagaaggt ... ctttctgcagTACTACTATGGCTGCTCACAGCAGCCTGCATCAAGACTGGCCGGCCACAAA
EST: TGATCCGAAGAATACTAGATGGAGTTACCACAATGGAGGATCTTGGCCAG TACTACTATGGCTGCTCACAGCAGCCTGCATCAAGACTGGCCGGCCGCAAAEST: gi|87025617|gb|CI250111.1|CI250111
genomic: TGATCCGAAGAATACTAGATGGAGTTACCACAATGGAGGATCTTGGCCAGgttagaaggt ... ctttctgcagTACTACTATGGCTGCTCACAGCAGCCTGCATCAAGACTGGCCGGCCACAAA
EST: TGATCCGAAGAATACTAGATGGAGTTACCACAATGGAGGATCTTGGCCAG TACTACTATGGCTGCTCACAGCAGCCTGCATCAAGACTGGCCGGCCACAAAEST: gi|29646658|gb|CB651665.1|CB651665
genomic: TGATCCGAAGAATACTAGATGGAGTTACCACAATGGAGGATCTTGGCCAGgttagaaggt ... ctttctgcagTACTACTATGGCTGCTCACAGCAGCCTGCATCAAGACTGGCCGGCCACAAA
EST: TGATCCGAAGAATACTAGATGGAGTTACCACAATGGAGGATCTTGGCCAG TACTACTATGGCTGCTCACAGCAGCCTGCATCAAGACTGGCCGGCCACAAAEST: gi|86849620|gb|CI299768.1|CI299768
genomic: TGATCCGAAGAATACTAGATGGAGTTACCACAATGGAGGATCTTGGCCAGgttagaaggt ... ctttctgcagTACTACTATGGCTGCTCACAGCAGCCTGCATCAAGACTGGCCGGCCACAAA
EST: TGATCCGAAGAATACTAGATGGAGTTACCACAATGGAGGATCTTGGCCAG TACTACTATGGCTGCTCACAGCAGCCTGCATCAAGACTGGCCGGCCACAAA
genomic: TGATCCGAAGAATACTAGATGGAGTTACCACAATGGAGGATCTTGGCCAGgttagaaggt ... ctttctgcagTACTACTATGGCTGCTCACAGCAGCCTGCATCAAGACTGGCCGGCCACAAA
tgagtaacttcaacatgttataactttaacacaatttttcccattctttctgcagTACTACTATGGCTGCTCACAGCAGCCTGCATCAAGACTGGCCGGCCACAAATTGCAAGGCGTGCAATTGACTTAGCTGAGAGAAGGCTGTTGAAGGATGG
tttttcccattctttc CT-rich tract
ttataactttaacaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgattttctgtgttatttgtactacaaacggatagcatgacattgagtaacttcaacatgttataactttaacacaatttttcccattctttctgcagTACTACTATGGCTGCTCACAGCAGCCTGCATCAAGACTGGCCGGCCACAAATTGCAAGGCGTGCAATTGACTTAGCTGAGAGAAGGCTGTTGAAGGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
tctgatt
- - - - - tgtgtta
- - - - - - - - - - - -ctacaaa
- - - - - - - - - - - - - - - - - - gcatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aacatgt