1 5' 3' | 2 5' 3' | 3 5' 3' |
GGAGGCGCTCCGCCGCTCGCTCGTCTTCTTCCGCGGCCAGCCCCTCGGCACCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAGgttggttagctattcgcggcggcggcgctttcggattgtgcggattcagctcatctggaaaccgcatggcttgtctcatctggggagcttttgctttgctttgctttgctcgcag
species | Oryza sativa |
transcript | LOC_Os02g34560.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAG GTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGCEST: gi|58609058|gb|CK037091.1|CK037091
genomic: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAGgttggttagc ... ttgctcgcagGTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGC
EST: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAG GTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCEST: gi|29632226|gb|CB637235.1|CB637235
genomic: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAGgttggttagc ... ttgctcgcagGTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTC
EST: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAG GTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGCEST: gi|58665870|gb|CK054556.1|CK054556
genomic: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAGgttggttagc ... ttgctcgcagGTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGC
EST: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAG GTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGCEST: gi|58656839|gb|CK045519.1|CK045519
genomic: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAGgttggttagc ... ttgctcgcagGTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGC
EST: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAG GTGTACGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGCEST: gi|29677237|gb|CB673512.1|CB673512
genomic: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAGgttggttagc ... ttgctcgcagGTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGC
EST: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAG GTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGCEST: gi|58696107|gb|CK084794.1|CK084794
genomic: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAGgttggttagc ... ttgctcgcagGTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGC
EST: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAG GTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGC
genomic: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAGgttggttagc ... ttgctcgcagGTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGCGCTCCGCCGCTCGCTCGTCTTCTTCCGCGGCCAGCCCCTCGGCACCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAGgttggttagctattcgcggcggcggcgctttcggattgtgcggattcagctcatctggaaaccgcatggcttgtctcatctggggagcttttgctttgctttgctttgctcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG