1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctgtcacattttcgcaattacccaaacacagtagacaacttaaaatgctaaatccaaagctctgaagttgattaattactgtcctttttttattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGACACCGACATCTCGTCCGGGAAGATCTCCTTGAGAAGCTTG
species | Oryza sativa |
transcript | LOC_Os02g33110.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAA GTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGAEST: gi|88252292|gb|CI350720.1|CI350720
genomic: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGA
EST: TGCACCGACCCTACCAA GTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGGTCGEST: gi|87027005|gb|CI259658.1|CI259658
genomic: TGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTC-GTCG
EST: CGTCGTCCTCATGTGCACCGACCCTACCAA GTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGAEST: gi|29660430|gb|CB656705.1|CB656705
genomic: CGTCGTCCTCATGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGA
EST: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAA GTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGAEST: gi|4714303|gb|AU058270.1|AU058270
genomic: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGA
EST: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAA GTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGAEST: gi|29660456|gb|CB656731.1|CB656731
genomic: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGA
EST: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAA GTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGAEST: gi|29660422|gb|CB656697.1|CB656697
genomic: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGA
EST: GCCGGGCACGGCGCCAAGCCCGTCGTCTTCATGTGCACCGACCCTACCAA GTCTTCTGTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGAEST: gi|88996390|gb|CI259894.1|CI259894
genomic: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGA
EST: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAA GTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGAEST: gi|29660484|gb|CB656759.1|CB656759
genomic: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGA
EST: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAA GTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGAEST: gi|58590379|gb|CF988687.1|CF988687
genomic: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGA
EST: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAA GTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGAEST: gi|29660424|gb|CB656699.1|CB656699
genomic: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGA
EST: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAA GTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGAEST: gi|29674131|gb|CB670406.1|CB670406
genomic: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGA
EST: GCCGGGCACGGCGCCAAGCCCGTCGTCTTCATGTGCACCGACCCTACCAA GTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGAEST: gi|29642631|gb|CB647638.1|CB647638
genomic: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGA
EST: GCCGGGCACGGCGTCAAACCCGTCGTCCTCATGTGCACCGACCCTACCAA GTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCEST: gi|38477539|gb|CF961672.1|CF961672
genomic: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCC
EST: TGTGCACCGA-CCTA-CAA GTCTTCTCTTAGCCCGGATCTCTACAAGCCAAGC-TTGGCCGGGTTCGTCGEST: gi|29660393|gb|CB656668.1|CB656668
genomic: TGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAA-CTTTTGCCGGGTTCGTCG
EST: GCCGGGCACGGCGCCCAGCCCGTCGTCCTCATGTGCACCGACCCTACCAA GTCTTCTCTTAGCCCCGGATCTCTACAAEST: gi|117234559|gb|CT842376.1|CT842376
genomic: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCC-GGATCTCTACAA
EST: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAA GTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGAEST: gi|87039999|gb|CI194621.1|CI194621
genomic: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGA
EST: CCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAA GTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGAEST: gi|29660482|gb|CB656757.1|CB656757
genomic: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGA
EST: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAA GTCTTCTTTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTAGTCGAEST: gi|29660421|gb|CB656696.1|CB656696
genomic: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGA
EST: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTAC-AA GTCTTCTCTTACCCCG-ATCTCTA-AAGCCAACTTTTGCCGGGEST: gi|86500033|gb|CI142666.1|CI142666
genomic: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGG
EST: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAA GTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGA
genomic: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGA
tgctaaatccaaagctctgaagttgattaattactgtcctttttttattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGACACCGACATCTCGTCCGGGAAGATCTCCTTGAGAAGCTTG
ttactgtccttttttt CT-rich tract
aagttgattaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtcacattttcgcaattacccaaacacagtagacaacttaaaatgctaaatccaaagctctgaagttgattaattactgtcctttttttattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGACACCGACATCTCGTCCGGGAAGATCTCCTTGAGAAGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
ctgtcac
- - - - - - - - - - -ccaaaca
- - - - - - - - - - - - - - - - agacaac
- - - - - - - - - - - - - - - - - - - - - aaatgct
- - - - - - - - - - - - - - - - - - - - - - - - - aatccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgatt