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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGAGGCCGAGCAGGCGCCGAGCTCGGTGCCGGCCTCCATTGTCAGCCCCCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACGgtaagcaaagattgtgctcagctagcttctctgaacttttggatgttcttcagttcctctttgtcttggtttcttcgacatcttctcttcaaagcttggt...

Basic information

species Oryza sativa
transcript LOC_Os02g33110.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29631187|gb|CB636196.1|CB636196
EST:     CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACG                         ATCCGAACG
genomic: CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACGgtaagcaaag ... tcgacgacagATCCGAACG
EST: gi|88743914|gb|CI765350.1|CI765350
EST:     CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACG                         ATCCGAACG
genomic: CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACGgtaagcaaag ... tcgacgacagATCCGAACG
EST: gi|88744618|gb|CI767978.1|CI767978
EST:     CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACG                         ATCCGAACG
genomic: CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACGgtaagcaaag ... tcgacgacagATCCGAACG
EST: gi|88377617|gb|CI605452.1|CI605452
EST:     CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACG                         ATCCGAACG
genomic: CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACGgtaagcaaag ... tcgacgacagATCCGAACG
EST: gi|88739913|gb|CI761423.1|CI761423
EST:     CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACG                         ATCCGAACG
genomic: CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACGgtaagcaaag ... tcgacgacagATCCGAACG
EST: gi|29634866|gb|CB639875.1|CB639875
EST:     CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACG                         ATCCGAACG
genomic: CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACGgtaagcaaag ... tcgacgacagATCCGAACG
EST: gi|88431051|gb|CI574222.1|CI574222
EST:     CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACG                         ATCCGAACG
genomic: CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACGgtaagcaaag ... tcgacgacagATCCGAACG
EST: gi|29663240|gb|CB659515.1|CB659515
EST:     CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACG                         ATCCGAACG
genomic: CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACGgtaagcaaag ... tcgacgacagATCCGAACG
EST: gi|88371527|gb|CI602705.1|CI602705
EST:     CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACG                         ATCCGAACG
genomic: CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACGgtaagcaaag ... tcgacgacagATCCGAACG
EST: gi|58666318|gb|CK055004.1|CK055004
EST:     CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACG                         ATCCGAACG
genomic: CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACGgtaagcaaag ... tcgacgacagATCCGAACG
EST: gi|29635781|gb|CB640790.1|CB640790
EST:     CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACG                         ATCCGAACG
genomic: CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACGgtaagcaaag ... tcgacgacagATCCGAACG
EST: gi|88763844|gb|CI773260.1|CI773260
EST:     CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACG                         ATCCGAACG
genomic: CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACGgtaagcaaag ... tcgacgacagATCCGAACG
EST: gi|117234559|gb|CT842376.1|CT842376
EST:     CCTGCTCAGGACAGGATACCACTTCCAGCCCCCAATGAACTGGATCAACG                         ATCCGAACG
genomic: CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACGgtaagcaaag ... tcgacgacagATCCGAACG
EST: gi|88371360|gb|CI600208.1|CI600208
EST:     CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACG                         ATCCGAACG
genomic: CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACGgtaagcaaag ... tcgacgacagATCCGAACG
EST: gi|29635736|gb|CB640745.1|CB640745
EST:     CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACG                         ATCCGAACG
genomic: CCTGCTCAGGACAGGATACCACTTCCAGCCCCCGATGAACTGGATCAACGgtaagcaaag ... tcgacgacagATCCGAACG