1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagctcaatatccatgttatatttccgattctcatcttcgtaggcacattatttatttaaatagatcacttcctactttggatttttgcactgttaaaatttggcatatggcgtgattcttatatgtgcccctgtgattttttgtagGTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGGAGATCCCTCATAGCTAACACTTGCTGCTTCGTCAATAGGGTCACTGGTG
species | Oryza sativa |
transcript | LOC_Os02g24354.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCACCACACGGATGCAGTCTTGCCTACACCTATGGACCTCATCAACACT GTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGGEST: gi|66923878|gb|CX110726.1|CX110726
genomic: ATCACCACACGGATGCAGTCTTGCCTACACCTATGGACCTCATCAACACTgtgagctcaa ... ttttttgtagGTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGG
EST: ATCACCACACGGATGCAGTCTTGCCTACACCTATGGACCTCATCAACACT GTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGGEST: gi|29617055|gb|CB622067.1|CB622067
genomic: ATCACCACACGGATGCAGTCTTGCCTACACCTATGGACCTCATCAACACTgtgagctcaa ... ttttttgtagGTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGG
EST: ATCACCACACGGATGCAGTCTTGCCTACACCTATGGACCTCATCAACACT GTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGGEST: gi|218504209|gb|FG952211.1|FG952211
genomic: ATCACCACACGGATGCAGTCTTGCCTACACCTATGGACCTCATCAACACTgtgagctcaa ... ttttttgtagGTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGG
EST: ATCACCACACGGATGCAGTCTTGCCTACACCTATGGACCTCATCAACACT GTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGGEST: gi|300215949|gb|HO088575.1|HO088575
genomic: ATCACCACACGGATGCAGTCTTGCCTACACCTATGGACCTCATCAACACTgtgagctcaa ... ttttttgtagGTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGG
EST: ATCACCACACGGATGCAGTCTTGCCTACACCTATGGACCTCATCAACACT GTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGGEST: gi|86504611|gb|CI147244.1|CI147244
genomic: ATCACCACACGGATGCAGTCTTGCCTACACCTATGGACCTCATCAACACTgtgagctcaa ... ttttttgtagGTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGG
EST: ATCACCACACGGATGCAGTCTTGCCTACACCTATGGACCTCATCAACACT GTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGGEST: gi|29678833|gb|CB675108.1|CB675108
genomic: ATCACCACACGGATGCAGTCTTGCCTACACCTATGGACCTCATCAACACTgtgagctcaa ... ttttttgtagGTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGG
EST: ATCACCACACGGATGCAGTCTTGCCTACACCTATGGACCTCATCAACACT GTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGGEST: gi|29646003|gb|CB651010.1|CB651010
genomic: ATCACCACACGGATGCAGTCTTGCCTACACCTATGGACCTCATCAACACTgtgagctcaa ... ttttttgtagGTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGG
EST: ATCACCACACGGATGCAGTCTTGCCTACACCTATGGACCTCATCAACACT GTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGGEST: gi|218503477|gb|FG956525.1|FG956525
genomic: ATCACCACACGGATGCAGTCTTGCCTACACCTATGGACCTCATCAACACTgtgagctcaa ... ttttttgtagGTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGG
EST: ATCACCACACGGATGCAGTCTTGCCTACACCTATGGACCTCATCAACACT GTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGGEST: gi|86497107|gb|CI139740.1|CI139740
genomic: ATCACCACACGGATGCAGTCTTGCCTACACCTATGGACCTCATCAACACTgtgagctcaa ... ttttttgtagGTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGG
EST: ATCACCACACGGATGCAGTCTTGCCTACACCTATGGACCTCATCAACACT GTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGGEST: gi|29615943|gb|CB620955.1|CB620955
genomic: ATCACCACACGGATGCAGTCTTGCCTACACCTATGGACCTCATCAACACTgtgagctcaa ... ttttttgtagGTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGG
EST: ATCACCACACGGATGCAGTCTTGCNTACACCTATGGACCTCATCAACACT GTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGG
genomic: ATCACCACACGGATGCAGTCTTGCCTACACCTATGGACCTCATCAACACTgtgagctcaa ... ttttttgtagGTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGG
gttaaaatttggcatatggcgtgattcttatatgtgcccctgtgattttttgtagGTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGGAGATCCCTCATAGCTAACACTTGCTGCTTCGTCAATAGGGTCACTGGTG
ttttttgt CT-rich tract
attcttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctcaatatccatgttatatttccgattctcatcttcgtaggcacattatttatttaaatagatcacttcctactttggatttttgcactgttaaaatttggcatatggcgtgattcttatatgtgcccctgtgattttttgtagGTGCGAGAATTAGTTCTGTCACGAGATCTTACACTCATCATTGAACCTGGGAGATCCCTCATAGCTAACACTTGCTGCTTCGTCAATAGGGTCACTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT