1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGACAGTGAATTTGATTTGGAGAATATTGTCACTGCTGCGAGAGTTGCTGGGAAGAAAGTCCCTGTTTTGCTCAGGATAAACCCAGATGTGGATCCACAGgtaaagtttttcctcccacctcaggatacagtgggggatttagttatattggtatgctattgtgttattgtcatataatactagaaatcagattatatag...
species | Oryza sativa |
transcript | LOC_Os02g24354.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAAGAAAGTCCCTGTTTTGCTCAGGATAAACCCAGATGTGGATCCACAG GTCCATCCTTATGTTGCGACTGGAAACAAAACCTCCAAATTTGGTATCCGTEST: gi|58653249|gb|CK041929.1|CK041929
genomic: GGAAGAAAGTCCCTGTTTTGCTCAGGATAAACCCAGATGTGGATCCACAGgtaaagtttt ... ctgtcaacagGTCCATCCTTATGTTGCGACTGGAAACAAAACCTCCAAATTTGGTATCCGT
EST: GGAAGAAAGTCCCTGTTTTGCTCAGGATAAACCCAGATGTGGATCCACAG GTCCATCCTTATGTTGCGACTGGAAACAAAACCTCCAAATTTGGTATCCGTEST: gi|218504209|gb|FG952211.1|FG952211
genomic: GGAAGAAAGTCCCTGTTTTGCTCAGGATAAACCCAGATGTGGATCCACAGgtaaagtttt ... ctgtcaacagGTCCATCCTTATGTTGCGACTGGAAACAAAACCTCCAAATTTGGTATCCGT
EST: GGAAGAAAGTCCCTG-TTTGCTCAGGATAAACCCAGATGTGGATCCACAG GTCCATCCTTATGTTGCGACTGGAAACAAAACCTCCAAATTTGGTATCCGTEST: gi|86850989|gb|CI311207.1|CI311207
genomic: GGAAGAAAGTCCCTGTTTTGCTCAGGATAAACCCAGATGTGGATCCACAGgtaaagtttt ... ctgtcaacagGTCCATCCTTATGTTGCGACTGGAAACAAAACCTCCAAATTTGGTATCCGT
EST: GGAAGAAAGTCCCTGTTTTGCTCAGGATAAACCCAGATGTGGATCCACAG GTCCATCCTTAEST: gi|300215949|gb|HO088575.1|HO088575
genomic: GGAAGAAAGTCCCTGTTTTGCTCAGGATAAACCCAGATGTGGATCCACAGgtaaagtttt ... ctgtcaacagGTCCATCCTTA
EST: GGAAGAAAGTCCCTGTTTTGCTCAGGATAAACCCAGATGTGGATCCACAG GTCCATCCTTATGTTGCGACTGGAAACAAAACCTCCAAATTTGGTATCCGTEST: gi|58677870|gb|CK066557.1|CK066557
genomic: GGAAGAAAGTCCCTGTTTTGCTCAGGATAAACCCAGATGTGGATCCACAGgtaaagtttt ... ctgtcaacagGTCCATCCTTATGTTGCGACTGGAAACAAAACCTCCAAATTTGGTATCCGT
EST: GGAAGAAAGTCCCTGTTTTGCTCAGGATAAACCCAGATGTGGATCCACAG GTCCATCCTTATGTTGCGACTGGAAACAAAACCTCCAAATTTGGTATCCGT
genomic: GGAAGAAAGTCCCTGTTTTGCTCAGGATAAACCCAGATGTGGATCCACAGgtaaagtttt ... ctgtcaacagGTCCATCCTTATGTTGCGACTGGAAACAAAACCTCCAAATTTGGTATCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACAGTGAATTTGATTTGGAGAATATTGTCACTGCTGCGAGAGTTGCTGGGAAGAAAGTCCCTGTTTTGCTCAGGATAAACCCAGATGTGGATCCACAGgtaaagtttttcctcccacctcaggatacagtgggggatttagttatattggtatgctattgtgttattgtcatataatactagaaatcagattatatag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggggg