1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tatttcatatggccatgttgatagcaagcttggttttggaacttgatgatttaccatgtggtattcaggattaacaagcagcaatactctttcattgcagATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGACACTATACTTGTTGCTGAATACCTGCTGGGAAAGTCTACCGTGAAAGTTG
species | Oryza sativa |
transcript | LOC_Os02g17500.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAG ATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGACEST: gi|86260375|gb|CI066248.1|CI066248
genomic: GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAGgtgctaatct ... ttcattgcagATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGAC
EST: GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAG ATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGTCEST: gi|88457624|gb|CI537022.1|CI537022
genomic: GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAGgtgctaatct ... ttcattgcagATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGAC
EST: TCGCTTCTACAAACACAATAAAG ATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGACEST: gi|218493904|gb|FG949299.1|FG949299
genomic: TCGCTTCTACAAACACAATAAAGgtgctaatct ... ttcattgcagATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGAC
EST: GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAG ATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGACEST: gi|218498875|gb|FG949815.1|FG949815
genomic: GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAGgtgctaatct ... ttcattgcagATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGAC
EST: GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAG ATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGACEST: gi|86596824|gb|CI270620.1|CI270620
genomic: GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAGgtgctaatct ... ttcattgcagATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGAC
EST: GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAG ATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGACEST: gi|86432622|gb|CI086233.1|CI086233
genomic: GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAGgtgctaatct ... ttcattgcagATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGAC
EST: GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAG ATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGAC
genomic: GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAGgtgctaatct ... ttcattgcagATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGAC
atgatttaccatgtggtattcaggattaacaagcagcaatactctttcattgcagATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGACACTATACTTGTTGCTGAATACCTGCTGGGAAAGTCTACCGTGAAAGTTG
gattaac putative branch site (score: 90)
ctctttcatt putative PPT
attaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttcatatggccatgttgatagcaagcttggttttggaacttgatgatttaccatgtggtattcaggattaacaagcagcaatactctttcattgcagATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGACACTATACTTGTTGCTGAATACCTGCTGGGAAAGTCTACCGTGAAAGTTG
- - - - - - -catgttg
- - - - - - - - - - - agcaagc
- - - - - - - - - - - - - - - - - - - - -cttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - catgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcagc