1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaagctatcactgtgattggaacttggaagataatgttgaacattactcactgcacatctttactgctatagGCCTTTGCAATGGGACTTCAGGCTGTTGGAGCAAATCGTCACCACCTTGGTTCTGCAAGCGTATATCTTTCAGTTGGTGGCATGCTATT
species | Oryza sativa |
transcript | LOC_Os02g17500.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGGACAAACTAGGAAGGAAAGTACTTCTTTCAGGGAGCTTCCTTGGCATG GCCTTTGCAATGGGACTEST: gi|218501803|gb|FG948060.1|FG948060
genomic: TGGACAAACTAGGAAGGAAAGTACTTCTTTCAGGGAGCTTCCTTGGCATGgtaagctatc ... actgctatagGCCTTTGCAATGGGACT
EST: TGGACAAACTAGGAAGGAAAGTACTTCTTTCAGGGAGCTTCCTTGGCATG GCCTTTGCAATGGGACTTCAGGCTGTTGGAGCAAATCGTCACCACCTTGGTEST: gi|218493904|gb|FG949299.1|FG949299
genomic: TGGACAAACTAGGAAGGAAAGTACTTCTTTCAGGGAGCTTCCTTGGCATGgtaagctatc ... actgctatagGCCTTTGCAATGGGACTTCAGGCTGTTGGAGCAAATCGTCACCACCTTGGT
EST: TGGACAAACTAGGAAGGAAAGTACTTCTTTCAGGGAGCTTCCTTGGCATG GCCTTTGCAATGGGACTTCAGGCTGTTGGAGCAAATCGTCACCACCTTGGTEST: gi|218498875|gb|FG949815.1|FG949815
genomic: TGGACAAACTAGGAAGGAAAGTACTTCTTTCAGGGAGCTTCCTTGGCATGgtaagctatc ... actgctatagGCCTTTGCAATGGGACTTCAGGCTGTTGGAGCAAATCGTCACCACCTTGGT
EST: TGGACAAACTAGGAAGGAAAGTACTTCTTTCAGGGAGCTTCCTTGGCATG GCCTTTGCAATGGGACTTCAGGCTGTTGGAGCAAATCGTCACCACCTTGGTEST: gi|218496023|gb|FG951379.1|FG951379
genomic: TGGACAAACTAGGAAGGAAAGTACTTCTTTCAGGGAGCTTCCTTGGCATGgtaagctatc ... actgctatagGCCTTTGCAATGGGACTTCAGGCTGTTGGAGCAAATCGTCACCACCTTGGT
EST: TGGACAAACTAGGAAGGAAAGTACTTCTTTCAGGGAGCTTCCTTGGCATG GCCTTTGCAATGGGACTTCAGGCTGTTGGAGCAAATCGTCACCACCTTGGTEST: gi|88732502|gb|CI755679.1|CI755679
genomic: TGGACAAACTAGGAAGGAAAGTACTTCTTTCAGGGAGCTTCCTTGGCATGgtaagctatc ... actgctatagGCCTTTGCAATGGGACTTCAGGCTGTTGGAGCAAATCGTCACCACCTTGGT
EST: TGGACAAACTAGGAAGGAAAGTACTTCTTTCAGGGAGCTTCCTTGGCATG GCCTTTGCAATGGGACTTCAGGCTGTTGGAGCAAATCGTCACCACC
genomic: TGGACAAACTAGGAAGGAAAGTACTTCTTTCAGGGAGCTTCCTTGGCATGgtaagctatc ... actgctatagGCCTTTGCAATGGGACTTCAGGCTGTTGGAGCAAATCGTCACCACC
tggaacttggaagataatgttgaacattactcactgcacatctttactgctatagGCCTTTGCAATGGGACTTCAGGCTGTTGGAGCAAATCGTCACCACCTTGGTTCTGCAAGCGTATATCTTTCAGTTGGTGGCATGCTATT
tactcac putative branch site (score: 71)
tctttact putative PPT
aagataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctatcactgtgattggaacttggaagataatgttgaacattactcactgcacatctttactgctatagGCCTTTGCAATGGGACTTCAGGCTGTTGGAGCAAATCGTCACCACCTTGGTTCTGCAAGCGTATATCTTTCAGTTGGTGGCATGCTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG