1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ataagaaatcttgtgacacagctacaaaattcttgagaatgttcagtttcaaatgcccatttatgctgaaatactgatccaattcattttctacacccagCAATGTGGTCATAACCAACATGATGATCATCGCACCACATGACTCGCCCAACACCGATGGAGTTGATCCAG
species | Oryza sativa |
transcript | LOC_Os02g15690.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTGTTCTCAAGAATTCACCCTTCTGGAACATCCATCCTGTTTATTGCGA CAATGTGGTCATAACCAACATGATGATCATCGCACCACATGACTCGCCCAAEST: gi|29645049|gb|CB650056.1|CB650056
genomic: ATTGTTCTCAAGAATTCACCCTTCTGGAACATCCATCCTGTTTATTGCGAgtaagcacac ... ctacacccagCAATGTGGTCATAACCAACATGATGATCATCGCACCACATGACTCGCCCAA
EST: ATTGTTCTCAAGAATTCACCCTTCTGGAACATCCATCCTGTTTATTGCGA CAATGTGGTCATAACCAACATGATGATCATCGCACCACATGACTCGCCCAAEST: gi|29642757|gb|CB647764.1|CB647764
genomic: ATTGTTCTCAAGAATTCACCCTTCTGGAACATCCATCCTGTTTATTGCGAgtaagcacac ... ctacacccagCAATGTGGTCATAACCAACATGATGATCATCGCACCACATGACTCGCCCAA
EST: ATTGTTCTCAAGAATTCACCCTTCTGGAACATCCATCCTGTTTATTGCGA CAATGTGGTCATAACCAACATGATGATCATCGCACCACATGACTCG
genomic: ATTGTTCTCAAGAATTCACCCTTCTGGAACATCCATCCTGTTTATTGCGAgtaagcacac ... ctacacccagCAATGTGGTCATAACCAACATGATGATCATCGCACCACATGACTCG
gtttcaaatgcccatttatgctgaaatactgatccaattcattttctacacccagCAATGTGGTCATAACCAACATGATGATCATCGCACCACATGACTCGCCCAACACCGATGGAGTTGATCCAG
tactgat putative branch site (score: 5)
ttcattttct putative PPT
aattcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataagaaatcttgtgacacagctacaaaattcttgagaatgttcagtttcaaatgcccatttatgctgaaatactgatccaattcattttctacacccagCAATGTGGTCATAACCAACATGATGATCATCGCACCACATGACTCGCCCAACACCGATGGAGTTGATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
ataagaaa
- - - - -cttgtga
- - - - - - - - - - -ctacaaa
- - - - - - - - - - - - - - attcttg
- - - - - - - - - - - - - - - - - - - - - - - - - -aatgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatcc