1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttcgtctgtagcaattttctctgactgttcctgcaaaagaactcattaagattgatgcaagtaattaacatgtcagattttttttatattaaaaaaaaagGTGACAAGGGAATCATCGATGGACAAGGTGATGTATGGTGGAACATGTGGAGGCAAAGGACACTTCAGCATACCAGGCCCAACCTTCTGGAATTCATGCA
species | Oryza sativa |
transcript | LOC_Os02g15690.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTACACCAGCTTCATCCACGGCGACGGCCTCCGCGACATCGTGATTACAG GTGACAAGGGAATCATCGATGGACAAGGTGATGTATGGTGGAACATGTGGAEST: gi|29645049|gb|CB650056.1|CB650056
genomic: GTACACCAGCTTCATCCACGGCGACGGCCTCCGCGACATCGTGATTACAGgtgaagaatt ... aaaaaaaaagGTGACAAGGGAATCATCGATGGACAAGGTGATGTATGGTGGAACATGTGGA
EST: GTACACCAGCTTCATCCACGGCGACGGCCTCCGCGACATCGTGATTACAG GTGACAAGGGAATCATCGATGGACAAGGTGATGTATGGTGGAACATGTGGAEST: gi|29642757|gb|CB647764.1|CB647764
genomic: GTACACCAGCTTCATCCACGGCGACGGCCTCCGCGACATCGTGATTACAGgtgaagaatt ... aaaaaaaaagGTGACAAGGGAATCATCGATGGACAAGGTGATGTATGGTGGAACATGTGGA
EST: GTACACCAGCTTCATCCACGGCGACGGCCTCCGCGACATCGTGATTACAG GTGACAAGGGAATCATCGATGGACAAGGTGATGTATGGTGGAACATGTGGA
genomic: GTACACCAGCTTCATCCACGGCGACGGCCTCCGCGACATCGTGATTACAGgtgaagaatt ... aaaaaaaaagGTGACAAGGGAATCATCGATGGACAAGGTGATGTATGGTGGAACATGTGGA
ttaagattgatgcaagtaattaacatgtcagattttttttatattaaaaaaaaagGTGACAAGGGAATCATCGATGGACAAGGTGATGTATGGTGGAACATGTGGAGGCAAAGGACACTTCAGCATACCAGGCCCAACCTTCTGGAATTCATGCA
aattaac putative branch site (score: 4)
taattaacatgtcaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcgtctgtagcaattttctctgactgttcctgcaaaagaactcattaagattgatgcaagtaattaacatgtcagattttttttatattaaaaaaaaagGTGACAAGGGAATCATCGATGGACAAGGTGATGTATGGTGGAACATGTGGAGGCAAAGGACACTTCAGCATACCAGGCCCAACCTTCTGGAATTCATGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - -ctgtagc
- - - - - - - - - - ctgactg
- - - - - - - - - - - - - - tcctgca
- - - - - - - - - - - - - - - - - -aaagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - tgatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacatgt