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...agcatcacaatatttccagtcaaacaacattactttgattgtattgctttttagttacatcatattaaatcattaatttccacttgaacattaaacttagGTTATTGATGCATGTGCGGCTCCAGGGAATAAAACAGTCCATCTTGCTGCACTCATGAATGGAGAGGGGAGTATTACAGCTTGTGAACTTAATAAAGAGA
species | Oryza sativa |
transcript | LOC_Os02g12600.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGCAAGTTGTATGGTGGCAGTTGCATTATGCCCTGAGCCAGGCTGGAAG GTTATTGATGCATGTGCGGCTCCAGGGAATAAAACAGTCCATCTTGCTGCAEST: gi|29645766|gb|CB650773.1|CB650773
genomic: AAGCAAGTTGTATGGTGGCAGTTGCATTATGCCCTGAGCCAGGCTGGAAGgttagtgcat ... ttaaacttagGTTATTGATGCATGTGCGGCTCCAGGGAATAAAACAGTCCATCTTGCTGCA
EST: AAGCAAGTTGTATGGTGGCAGTTGCATTATGCCCTGAGCCAGGCTGGAAG GTTATTGATGCATGTGCGGCTCCAGGGAATAAAACAGTCCATCTTGCTGCA
genomic: AAGCAAGTTGTATGGTGGCAGTTGCATTATGCCCTGAGCCAGGCTGGAAGgttagtgcat ... ttaaacttagGTTATTGATGCATGTGCGGCTCCAGGGAATAAAACAGTCCATCTTGCTGCA
gctttttagttacatcatattaaatcattaatttccacttgaacattaaacttagGTTATTGATGCATGTGCGGCTCCAGGGAATAAAACAGTCCATCTTGCTGCACTCATGAATGGAGAGGGGAGTATTACAGCTTGTGAACTTAATAAAGAGA
cattaat putative branch site (score: 5)
ttagttacatcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcatcacaatatttccagtcaaacaacattactttgattgtattgctttttagttacatcatattaaatcattaatttccacttgaacattaaacttagGTTATTGATGCATGTGCGGCTCCAGGGAATAAAACAGTCCATCTTGCTGCACTCATGAATGGAGAGGGGAGTATTACAGCTTGTGAACTTAATAAAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - -cacaata
- - - - - - - - - - - aacaaca
- - - - - - - - - - - - - - - - - -tgattgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgaaca