1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgaagtcttgtatttctatagcgtttactcttgaatgacctatgaataataccgattgcctttttcctcatctttaactcctttcacagGGGAAAGCAAGTTGTATGGTGGCAGTTGCATTATGCCCTGAGCCAGGCTGGAAG
species | Oryza sativa |
transcript | LOC_Os02g12600.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGATTTGCATAACCACCATTTGGTCTCAGAAGGAAAAGTATTTTTACAA GGGAAAGCAAGTTGTATGGTGGCAGTTGCATTATGCCCTGAGCCAGGCTGGEST: gi|29645766|gb|CB650773.1|CB650773
genomic: CTGATTTGCATAACCACCATTTGGTCTCAGAAGGAAAAGTATTTTTACAAgtgaagtctt ... cctttcacagGGGAAAGCAAGTTGTATGGTGGCAGTTGCATTATGCCCTGAGCCAGGCTGG
EST: AGAAGGAAAAGTATTTTTACAA GGGAAAGCAAGTTGTATGGTGGCAGTTGCATTATGCCCTGAGCCAGGCTGG
genomic: AGAAGGAAAAGTATTTTTACAAgtgaagtctt ... cctttcacagGGGAAAGCAAGTTGTATGGTGGCAGTTGCATTATGCCCTGAGCCAGGCTGG
atgacctatgaataataccgattgcctttttcctcatctttaactcctttcacagGGGAAAGCAAGTTGTATGGTGGCAGTTGCATTATGCCCTGAGCCAGGCTGGAAG
ctttaac putative branch site (score: 5)
ttgcctttttcctcat CT-rich tract
tatgaataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaagtcttgtatttctatagcgtttactcttgaatgacctatgaataataccgattgcctttttcctcatctttaactcctttcacagGGGAAAGCAAGTTGTATGGTGGCAGTTGCATTATGCCCTGAGCCAGGCTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG