1 5' 3' | 2 5' 3' | 3 5' 3' |
AGAGGGATTCAAAGGAGAAGCATTCCAAGGAGAAGGAGAAGAGCAAGCGAAAGCACAAGGATGATgtgagttctctaagtctgaatgatgctatgaatctactgggcatcatcaatcaaatgattttgcatattagcagttaagctatctgaataggctatttag...
species | Oryza sativa |
transcript | LOC_Os02g07420.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAAGCATTCCAAGGAGAAGGAGAAGAGCAAGCGAAAGCACAAGGATGAT GATTTCAAAGAAATATCCAAAGATGACTATTTCGCAAAGAACAATGAGTTCEST: gi|86530039|gb|CI170245.1|CI170245
genomic: AGAAGCATTCCAAGGAGAAGGAGAAGAGCAAGCGAAAGCACAAGGATGATgtgagttctc ... actgaaacagGATTTCAAAGAAATATCCAAAGATGACTATTTCGCAAAGAACAATGAGTTC
EST: GGAGAAGGAGAAGAGCAAGCGAAAGCACAAGGATGAT GATTTCAAAGAAATATCCAAAGATGACTATTTCGCAAAGAACAATGAGTTC
genomic: GGAGAAGGAGAAGAGCAAGCGAAAGCACAAGGATGATgtgagttctc ... actgaaacagGATTTCAAAGAAATATCCAAAGATGACTATTTCGCAAAGAACAATGAGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGGGATTCAAAGGAGAAGCATTCCAAGGAGAAGGAGAAGAGCAAGCGAAAGCACAAGGATGATgtgagttctctaagtctgaatgatgctatgaatctactgggcatcatcaatcaaatgattttgcatattagcagttaagctatctgaataggctatttag
- - - - - - - AGAAGC
- - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG