1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttgagaacatacataatggcatactgcaccctttgagctctccatttcctttctccttgagaccatgcttatcattgttcttttgttttactgaaacagGATTTCAAAGAAATATCCAAAGATGACTATTTCGCAAAGAACAATGAGTTCGCAACCTGGTTGAAGGAAGAAAAAGGCAAATTTTTCTCTGATCTTTCTT
species | Oryza sativa |
transcript | LOC_Os02g07420.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAAGCATTCCAAGGAGAAGGAGAAGAGCAAGCGAAAGCACAAGGATGAT GATTTCAAAGAAATATCCAAAGATGACTATTTCGCAAAGAACAATGAGTTCEST: gi|86530039|gb|CI170245.1|CI170245
genomic: AGAAGCATTCCAAGGAGAAGGAGAAGAGCAAGCGAAAGCACAAGGATGATgtgagttctc ... actgaaacagGATTTCAAAGAAATATCCAAAGATGACTATTTCGCAAAGAACAATGAGTTC
EST: GGAGAAGGAGAAGAGCAAGCGAAAGCACAAGGATGAT GATTTCAAAGAAATATCCAAAGATGACTATTTCGCAAAGAACAATGAGTTC
genomic: GGAGAAGGAGAAGAGCAAGCGAAAGCACAAGGATGATgtgagttctc ... actgaaacagGATTTCAAAGAAATATCCAAAGATGACTATTTCGCAAAGAACAATGAGTTC
tttcctttctccttgagaccatgcttatcattgttcttttgttttactgaaacagGATTTCAAAGAAATATCCAAAGATGACTATTTCGCAAAGAACAATGAGTTCGCAACCTGGTTGAAGGAAGAAAAAGGCAAATTTTTCTCTGATCTTTCTT
ttcttttgttttact CT-rich tract
ttttgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgagaacatacataatggcatactgcaccctttgagctctccatttcctttctccttgagaccatgcttatcattgttcttttgttttactgaaacagGATTTCAAAGAAATATCCAAAGATGACTATTTCGCAAAGAACAATGAGTTCGCAACCTGGTTGAAGGAAGAAAAAGGCAAATTTTTCTCTGATCTTTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - catacat
- - - - - - - - - - - tactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttct