1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TCAAACACTAACTACTCCGGGCTGCTTAGATGAATCAGGATATGTTCCATGTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAGgtgagtgaatggcttgcatgcttgatgcaccatcagttgcaaagttgcatgtttttttttcctttttcctcaattcactttgaattgacaaacttgtgtcctatag
species | Oryza sativa |
transcript | LOC_Os02g06910.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAG GTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGCEST: gi|29666700|gb|CB662975.1|CB662975
genomic: GTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAGgtgagtgaat ... tgtcctatagGTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGC
EST: GTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAG GTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGCEST: gi|58685183|gb|CK073870.1|CK073870
genomic: GTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAGgtgagtgaat ... tgtcctatagGTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGC
EST: GTTCAGAT-ATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAG GTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGCEST: gi|29666699|gb|CB662974.1|CB662974
genomic: GTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAGgtgagtgaat ... tgtcctatagGTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGC
EST: GTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAG GTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGCEST: gi|29656950|gb|CB653225.1|CB653225
genomic: GTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAGgtgagtgaat ... tgtcctatagGTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGC
EST: GTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAG GTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGCEST: gi|58654954|gb|CK043634.1|CK043634
genomic: GTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAGgtgagtgaat ... tgtcctatagGTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGC
EST: GTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAG GTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGCEST: gi|29663502|gb|CB659777.1|CB659777
genomic: GTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAGgtgagtgaat ... tgtcctatagGTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGC
EST: GTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAG GTTTACAAATCTGGAACCGGTGGAAGGTTGCTCGACATCACTAGATTTAGCEST: gi|29663501|gb|CB659776.1|CB659776
genomic: GTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAGgtgagtgaat ... tgtcctatagGTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGC
EST: TGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAG GTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGC
genomic: TGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAGgtgagtgaat ... tgtcctatagGTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAACACTAACTACTCCGGGCTGCTTAGATGAATCAGGATATGTTCCATGTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAGgtgagtgaatggcttgcatgcttgatgcaccatcagttgcaaagttgcatgtttttttttcctttttcctcaattcactttgaattgacaaacttgtgtcctatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC