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gtagatcttgaaacatctgtttgtttatagaccactcatatgcttttattacctcatttttagtcttatcatattttcagatagtgtgctttagtcattttctaccttcactatgagcttgcttcaaaattaagcatgtgaacaaggttttctttgaatcatgcagGTTGGATGGGATGAGTCGACTGCTGGAGAGAGACAGCCAAGGGTGTCTCTTTGGGAGATCGAGCCTCTGACAACTTTCCCGATGTATCCATCTCCTTTTC
species | Oryza sativa |
transcript | LOC_Os02g06910.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTGATCTTGATCCTGTTCGTTGGATGAACTCACACTGGCGCTCTGTCAAG GTTGGATGGGATGAGTCGACTGCTGGAGAGAGACAGCCAAGGGTGTCTCTTEST: gi|58661860|gb|CK050540.1|CK050540
genomic: GTGATCTTGATCCTGTTCGTTGGATGAACTCACACTGGCGCTCTGTCAAGgtagatcttg ... aatcatgcagGTTGGATGGGATGAGTCGACTGCTGGAGAGAGACAGCCAAGGGTGTCTCTT
EST: GTGATCTTGATCCTGTTCGTTGGATGAACTCACACTGGCGCTCTGTCAAG GTTGGATGGGATGAGTCGACTGCTGGAGAGAGACAGCCCAGGGTGTCTCTTEST: gi|58663143|gb|CK051829.1|CK051829
genomic: GTGATCTTGATCCTGTTCGTTGGATGAACTCACACTGGCGCTCTGTCAAGgtagatcttg ... aatcatgcagGTTGGATGGGATGAGTCGACTGCTGGAGAGAGACAGCCAAGGGTGTCTCTT
EST: GTGATCTTGATCCTGTTCGTTGGATGAACTCACACTGGCGCTCTGTCAAG GTTGGATGGGATGAGTCGACTGCTGGAGAGAGACAGCCAAGGGTGTCTCTTEST: gi|29634511|gb|CB639520.1|CB639520
genomic: GTGATCTTGATCCTGTTCGTTGGATGAACTCACACTGGCGCTCTGTCAAGgtagatcttg ... aatcatgcagGTTGGATGGGATGAGTCGACTGCTGGAGAGAGACAGCCAAGGGTGTCTCTT
EST: GTGATCTTGATCCTGTTCGTTGGATGAACTCACACTGGCGCTCTGTCAAG GTTGGATGGGATGAGTCGACTGCTGGAGAGAGACAGCCAAGGGTGTCTCTTEST: gi|58661213|gb|CK049893.1|CK049893
genomic: GTGATCTTGATCCTGTTCGTTGGATGAACTCACACTGGCGCTCTGTCAAGgtagatcttg ... aatcatgcagGTTGGATGGGATGAGTCGACTGCTGGAGAGAGACAGCCAAGGGTGTCTCTT
EST: GTGATCTTGATCCTGTTCGTTGGATGAACTCACACTGGCGCTCTGTCAAG GTGGGATGGGATGAGTCGACTGCTGGAGAGAGACAGCCAAGGGTGTCTCTT
genomic: GTGATCTTGATCCTGTTCGTTGGATGAACTCACACTGGCGCTCTGTCAAGgtagatcttg ... aatcatgcagGTTGGATGGGATGAGTCGACTGCTGGAGAGAGACAGCCAAGGGTGTCTCTT
tatgagcttgcttcaaaattaagcatgtgaacaaggttttctttgaatcatgcagGTTGGATGGGATGAGTCGACTGCTGGAGAGAGACAGCCAAGGGTGTCTCTTTGGGAGATCGAGCCTCTGACAACTTTCCCGATGTATCCATCTCCTTTTC
ttcaaaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagatcttgaaacatctgtttgtttatagaccactcatatgcttttattacctcatttttagtcttatcatattttcagatagtgtgctttagtcattttctaccttcactatgagcttgcttcaaaattaagcatgtgaacaaggttttctttgaatcatgcagGTTGGATGGGATGAGTCGACTGCTGGAGAGAGACAGCCAAGGGTGTCTCTTTGGGAGATCGAGCCTCTGACAACTTTCCCGATGTATCCATCTCCTTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC